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Microarray Result Analysis --
Customized Microarray Platform

The following steps will guide you through the analysis of customized microarray results.
You have to supply your probes as well as probe annotation file. Up to 20000 probes are allowed in a single analysis.

Step one: Upload your microarray probe annotation file

Upload your probe annotation file for Gene Ontology Terms below.
Your annotation file must be of this format.

Maximum file size is 6M.
You only have to annotate your probes to directly associated GO nodes.

Step two: Upload your probe list

Cut and paste your probe IDs below.

Or alternatively, upload a file containing your probe IDs.

Text file is required. Each line should have only one probe ID.

Step Optional: Advanced Parameter Settings

Use default Let me choose

Select statistical test method		Hypergeometric (recommended)		Fisher Exact Test		Χ2 Test
Use Adrian Alexa's improved weighted scoring algorithm?		No (recommended)		Yes (More specific but much slower. Only Fisher Test is available.)
Select multi-test adjustment method		Yekutieli (FDR under dependency) (recommended)	Hochberg (FDR)	Bonferroni	Hochberg	Hommel	Not adjust
Significance Level of Enrichment		0.1 0.05 0.01 0.001 We recommed 0.1 for FDR value or 0.01 if not adjust
Graphic result format		PDF (recommended, need Adobe Reader)	PostScript	SVG (might need plug-in)	PNG	GIF	JPEG
Select detail information level		Minimum (Only showing GOID)		Normal (Showing GOID and Term definition)		All (Showing GOID, definition and statistics)
Select font size		6 pt 7 pt 8 pt 9 pt 10 pt 11 pt 12 pt
Optimize the graph width:height ratio		Yes (recommended)	No
Reduce graph size by condensing non-significant nodes to points?		No (recommended)	Yes

Step three: Start analysis

Enter your email address below for sending you the finishing page (required):
   
Name your job below (optional):

Start analysis   Reset
This would take you up to 30 min!
(Note: Up to 15 min extra time is needed if using Adrian Alexa's improved score. See "Advanced Parameter Settings" above for details.)
Your result will be kept for 7 days!