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Microarray result analysis --
Agilent^® platform

The following steps will guide you through the analysis of Agilent^® microarray results.
You have to supply your gene list in Agilent probe ID format. Other geneID format will be ignored. Up to 20000 probe set IDs are allowed in a single analysis.

Step one: Choose the microarray platform ID

Arabidopsis (V3) Gene Expression Microarray (arrayID:015059) Arabidopsis (V4) Gene Expression Microarray (arrayID:021169) Arabidopsis 2 Oligo Microarray (arrayID:011839) Arabidopsis 2 Oligo Microarray (V2) (arrayID:013324) Arabidopsis 3 Oligo Microarray (arrayID:012600) B. napus (Brassica) Oligo Microarray (arrayID:022520) B. taurus (Bovine) Oligo Microarray v2 (arrayID:023647) Barley Gene Expression Microarray (arrayID:021623) Bovine Gene Expression Microarray (arrayID:015354) C. elegans (V2) Gene Expression Microarray (arrayID:020186) C. elegans Gene Expression Microarray (arrayID:015061) C. elegans Oligo Microarray (arrayID:012795) C. familiaris (Dog) Oligo Microarray (arrayID:013807) Canine (V2) Gene Expression Microarray (arrayID:021193) Canine Gene Expression Microarray (arrayID:015067) Chicken Gene Expression Microarray (arrayID:015068) D. melanogaster (FruitFly) Oligo Microarray - V2 (arrayID:021791) D. rerio (Zebrafish) Oligo Microarray (arrayID:013223) D. rerio (Zebrafish) Oligo Microarray V3 (arrayID:026437) Drosophila Gene Expression Microarray (arrayID:018972) E. coli Gene Expression Microarray (arrayID:020097) G. gallus (Chicken) Oligo Microarray v2 (arrayID:026441) G. hirsutum (Cotton) Oligo Microarray (arrayID:022523) G. max (Soybean) Oligo Microarray 4x44K (arrayID:016772) Gallus gallus (Chicken) Oligo Microarray (arrayID:014756) Horse Gene Expression Microarray (arrayID:021322) human (arrayID:026158) Human 1A Microarray (arrayID:011521) Human 1A Microarray (V2) (arrayID:012097) Human 1B Microarray (arrayID:011871) Human MAQC Focus Microarray (arrayID:015034) M. mulatta (Rhesus) Oligo Microarray (arrayID:013791) M. mulatta (Rhesus) Oligo Microarray v2 (arrayID:026806) M. truncatula (Medicago) Oligo Microarray (arrayID:022524) Magnaporthe (V2) Gene Expression Microarray (arrayID:015060) Magnaporthe grisea Oligo Microarray (arrayID:011842) Maize Gene Expression Microarray 4x44K (arrayID:016047) MosquitoGene Expression Microarray (arrayID:020449) Mouse Dev Gene Expression Microarray (arrayID:015062) Mouse Developmental Microarray (arrayID:011472) Mouse Developmental Microarray 44K (arrayID:012799) Mouse Microarray (arrayID:011978) Mouse Oligo Microarray (V2) (arrayID:013326) O. sativa (Rice) Oligo Microarray 4x44K (arrayID:015058) Pig Gene Expression Microarray (arrayID:020109) Rabbit Gene Expression Microarray (arrayID:020908) Rat Oligo Microarray (arrayID:011868) Rat Oligo Microarray (V2) (arrayID:013328) Rhesus Macaque Gene Expression Microarray (arrayID:015421) Rice Gene Expression Microarray (arrayID:015241) Rice Microarray (arrayID:012106) S. scrofa (Pig) Oligo Microarray v2 (arrayID:026440) Salmon Gene Expression Microarray (arrayID:020938) Sheep Gene Expression Microarray (arrayID:019921) SurePrint G3 Human Exon 2x400K Microarray (arrayID:028680) SurePrint G3 Human Exon 4x180K Microarray (arrayID:028679) SurePrint G3 Human GE 8x60K Microarray (arrayID:028004) SurePrint G3 Human GE v2 8x60K Microarray (arrayID:039494) SurePrint G3 Mouse Exon 2x400K Microarray (arrayID:028727) SurePrint G3 Mouse Exon 4x180K Microarray (arrayID:030493) SurePrint G3 Mouse GE 8x60K Microarray (arrayID:028005) SurePrint G3 Rat Exon 2x400K Microarray (arrayID:028728) SurePrint G3 Rat Exon 4x180K Microarray (arrayID:028744) SurePrint G3 Rat GE 8x60K Microarray (arrayID:028279) Tobacco Gene Expression Microarray (arrayID:021113) Tomato Gene Expression Microarray (arrayID:022270) Wheat Gene Expression Microarray (arrayID:022297) Whole Human Genome Microarray 4x44K (arrayID:014850) Whole Human Genome Microarray 4x44K v2 (arrayID:026652) Whole Human Genome Oligo Microarray (arrayID:012391) Whole Mouse Genome (arrayID:012694) Whole Mouse Genome Microarray 4x44K (arrayID:014868) Whole Mouse Genome Microarray 4x44K v2 (arrayID:026655) Whole Rat Genome Microarray (arrayID:013162) Whole Rat Genome Microarray 4x44K (arrayID:014879) Whole Rat Genome Microarray 4x44K v2 (arrayID:026657) Whole Rat Genome Microarray 4x44K v3 (arrayID:028282) X. laevis (Frog) Oligo Microarray v2 (arrayID:023448) Xenopus Gene Expression Microarray (arrayID:015066) Xenopus laevis (Frog) Oligo Microarray (arrayID:013665) Yeast (V1) Gene Expression Microarray (arrayID:015072) Yeast (V2) Gene Expression Microarray (arrayID:016322) Yeast microarray (arrayID:011447) Yeast Oligo Microarray (V2) (arrayID:013384) Zebrafish (v2) Gene Expression Microarray (arrayID:019161) Zebrafish Gene Expression Microarray (arrayID:015064)

Step two: Upload your probe ID list

Cut and paste your probe ID list below.

Or alternatively, upload a file containing your probe IDs.

Text file is required. Each line should have only one probe ID.

Step Optional: Advanced Parameter Settings

Use default Let me choose

Select statistical test method		Hypergeometric (recommended)		Fisher Exact Test		Χ2 Test
Use Adrian Alexa's improved weighted scoring algorithm?		No (recommended)		Yes (More specific but much slower. Only Fisher Test is available.)
Select multi-test adjustment method		Yekutieli (FDR under dependency) (recommended)	Hochberg (FDR)	Bonferroni	Hochberg	Hommel	Not adjust
Significance Level of Enrichment		0.15 0.1 0.05 0.01 0.001 1e-4 1e-5 We recommed 0.1 for FDR value or 0.01 if not adjust
Minimum # of associated genes in reference (m value) for display		1 2 3 4 5 10 We recommed 5
Graphic result format		PDF (recommended, need Adobe Reader)	PostScript	SVG (might need plug-in)	PNG	GIF	JPEG
Select detail information level		Minimum (Only showing GOID)		Normal (Showing GOID and Term definition)		All (Showing GOID, definition and statistics)
Select font size		6 pt 7 pt 8 pt 9 pt 10 pt 11 pt 12 pt
Optimize the graph width:height ratio		Yes (recommended)	No
Reduce graph size by condensing non-significant nodes to points?		No (recommended)	Yes

Step three: Start analysis

Enter your email address below for sending you the finishing page (required):
   
Name your job below (optional):

Start analysis   Reset
This would take you up to 30 min!
(Note: Up to 15 min extra time is needed if using Adrian Alexa's improved score. See "Advanced Parameter Settings" above for details.)
Your result will be kept for 7 days since your last visit!