• Home Page
• Tools
• Statistics
• GOEAST Advance
  • Batch-Genes
  • Multi-GOEAST
  • Customized Analysis
• Tutorial
• FAQ
• Contact us

Batch Genes

The following steps will guide you through Batch-Genes analysis.
Currently we support 58 species from Mammals and Plants to Fungi and Bacteria.
Different species would require gene identifiers OR gene symbols in different format!
Up to 20000 gene IDs are allowed in a single analysis.

Step 2: Select gene ID / Symbol type and format

Please pick out the gene ID / Symbol type and Database format for Homo sapiens below:

Gene ID type		Gene ID	Gene Symbol
Database format	UniProtKB Annotated by: UniProtKB GO Annotation @ EBI (UniProtKB-GOA) Total annotated proteins: 45240	E.g. A2RRF1, A2RRL7, A2RRN2	E.g. BPIL2, TMEM213, CAPS2

Step 3: Upload your gene list

Cut and paste your gene ID / Symbol list below:

Or alternatively, upload a file containing your gene IDs:

One line can only have one gene ID / Symbol!

Step Optional: Advanced Parameter Settings

Use default Let me choose

Select statistical test method		Hypergeometric (recommended)		Fisher Exact Test		Χ2 Test
Use Adrian Alexa's improved weighted scoring algorithm?		No (recommended)		Yes (More specific but much slower. Only Fisher Test is available.)
Select multi-test adjustment method		Yekutieli (FDR under dependency) (recommended)	Hochberg (FDR)	Bonferroni	Hochberg	Hommel	Not adjust
Significance Level of Enrichment		0.15 0.1 0.05 0.01 0.001 1e-4 1e-5 We recommed 0.1 for FDR value or 0.01 if not adjust
Minimum # of associated genes in reference (m value) for display		1 2 3 4 5 10 We recommed 5
Graphic result format		PDF (recommended, need Adobe Reader)	PostScript	SVG (might need plug-in)	PNG	GIF	JPEG
Select detail information level		Minimum (Only showing GOID)		Normal (Showing GOID and Term definition)		All (Showing GOID, definition and statistics)
Select font size		6 pt 7 pt 8 pt 9 pt 10 pt 11 pt 12 pt
Optimize the graph width:height ratio		Yes (recommended)	No
Reduce graph size by condensing non-significant nodes to points?		No (recommended)	Yes

Step four: Start analysis

Enter your email address below for sending you the finishing page (required):
   
Name your job below (optional):

Start analysis   Reset
This would take you up to 30 min!
(Note: Up to 15 min extra time is needed if using Adrian Alexa's improved score. See "Advanced Parameter Settings" above for details.)
Your result will be kept for 7 days since your last visit!