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Small RNA Target Prediction

Please paste your sequences below or upload a FASTA file.

Please upload the cleaned small RNA sequences in FASTA format or in plain text with each sequence in a seperate line:

Or paste the cleaned small RNA sequences below:

Select from published miRNAs (miRBase release 17, Apr. 11, 2011):




Please select a transcript library:

Please paste your gene/transcript sequences below:




Modify the parameters
Penalty score threshold (0-5, lower is better):
Five prime boundary of essential sequence (1-2):
Three prime boundary of essential sequence (8-31):
Maximal number of permitted gaps (0-5):
Position after which with gaps permitted (1-30):



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