Please upload the cleaned small RNA sequences in FASTA format or in plain text with each sequence in a seperate line: Help
Or paste the cleaned small RNA sequences here: DemoHelp >ath-miR157a MIMAT0000172 UUGACAGAAGAUAGAGAGCAC >ath-miR158a MIMAT0000176 UCCCAAAUGUAGACAAAGCA >ath-miR160a MIMAT0000178 UGCCUGGCUCCCUGUAUGCCA Show small RNA conservation information for each submitted sequence in the result. (Check this option will slow down the analysis process.)
Please select your source genome: DemoHelp Aquilegia coerulea (Colorado blue columbine), JGI 8X assembly release v1.0 Ananas comonus (Pineapple), Pineapple genomics database pineapple genome v3 Arabidopsis lyrata (Lyre-leaved rock cress), JGI release v1.0 Arabidopsis thaliana (Thale cress), TAIR release 10 from TAIR Brachypodium distachyon (Purple false brome), JGI 8x assembly release v1.0 of strain Bd21 with JGI/MIPS PASA annotation Brassica napus (Rapeseed), Brassica napus genome releas version 4.1 from Genoscope Genome Database Brassica napus Genome Browser Brassica oleracea (Cabbage), Whole genome shotgun sequenced genome version 1.0 from Bolbase Brassica rapa (Mustard), BAC-based genome sequence data from GenBank BrGDB154 Carica papaya (Papaya), ASGPB release of 2007 Chlamydomonas reinhardtii (Green algae), Augustus update 10.2 (u10.2) annotation of JGI assembly v4 Citrus clementina (Clementine), JGI v0.9 assembly and annotation Citrus sinensis (Sweet orange), JGI v1.1 annotation on v1 assembly Cucumis sativus (Cucumber), Roche 454-XLR assembly and JGI v1.0 annotation Ectocarpus siliculosus (Dillwyn), Ectocarpus siliculosus strain Ec 32 (CCAP 1310/04) chromosomes, sequenced by Genoscope Ectocarpus siliculosus (Dillwyn), Ectocarpus siliculosus strain Ec 32 (CCAP 1310/04) scaffolds, sequenced by Genoscope Ectocarpus siliculosus (Dillwyn), Ectocarpus siliculosus strain Ec 32 (CCAP 1310/04) contigs, sequenced by Genoscope Eucalyptus grandis (Eucalyptus), JGI v1.0 assembly and annotation Glycine max (Soybean), JGI Glyma1.0 annotation of the chromosome-based Glyma1 assembly Hordeum vulgare (Barley), The International Barley Genome Sequencing Consortium (IBSC), Nov. 21, 2012 Malus x domestica (Apple), Malus x domestica Genome v1.0 pseudo haplotypes assembly from GDR Manihot esculenta (Cassava), Assembly version 4, JGI annotation v4.1 Medicago truncatula (Barrel medic), Release Mt3.0 from the Medicago Genome Sequence Consortium Mimulus guttatus (Monkey flower), JGI 7x assembly release v1.0 of strain IM62, annotation v1.0 Nicotiana benthamiana (Wild tobacco), Niben genome assembly v0.4.4 scaffolds, by Sol Genomics Networks, 10-06-2012 Oryza sativa (Rice), MSU Release 6.1 of the Rice Genome Annotation Oryza sativa (Rice), Annotation data on IRGSP build 5 genome sequence Physcomitrella patens (Moss), JGI assembly release v1.1 and COSMOSS annotation v1.6 Populus trichocarpa (Poplar), JGI assembly release v2.0, annotation v2.2 Prunus persica (Peach), JGI release v1.0 Ricinus communis (Castor bean), TIGR release 0.1 Selaginella moellendorffii (Spikemoss), JGI v1.0 assembly and annotation Setaria italica (Foxtail millet), JGI 8.3X chromosome-scale assembly release 2.0, annotation version 2.1 Solanum lycopersicum (Tomato), The International Tomato Annotation Group, April 29, 2011 Sorghum bicolor (Sweet Sorghum), Sbi1.4 models from MIPS/PASA on v1.0 assembly Vitis vinifera (Grape), March 2010 12X assembly and annotation from Genoscope Volvox carteri (Volvox), GenBank annotations based on JGI v1.0 Zea mays (Maize), Unfiltered protein coding models from Maizesequence.org release 5a.59