| General information of RDP00694 | |
|---|---|
| Gene Symbol: | LOC101928782 |
| RefSeq ID: | NR_110836 |
| Repeat coordinate: | chr7:131933589-131933652 (+) |
| Repeat size: | 21 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.000; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
7
131933650
.
G
A,GAAAAGAAGAAGAAGAAGAAGAAA
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
7
131933585
.
AGAAAG
AGGAAAG,A
94427.13
7
131933586
rs867541702
GAAAGAAGAAGAA
GAAGAAGAAGAA,G,GGAA
1581785.82
7
131933590
.
GAAGAAGAA
GAAAGAAGAA,GAAGAAAGAAGAA,G
168097.59
7
131933591
.
AAG
A
38385.35
7
131933592
.
A
AGAGGAAGAAGAAGAG,AGAG,G
106179.04
7
131933593
.
G
GA,C
96629.05
7
131933594
.
AAG
A
23461.68
7
131933595
rs796754443
A
G,AGAG
85479.15
7
131933596
.
G
GA
22780.94
7
131933597
.
A
AAGT
53819.26
7
131933598
rs575732388
A
G
20497.32
7
131933602
.
G
A,C
50710.83
7
131933605
.
G
GA
16735.56
7
131933607
rs188096022
A
G
68758.84
7
131933618
.
A
AAGC
17041.60
7
131933619
.
AGAAGAAGAAG
A
51172.82
7
131933622
rs543507027
AGAAGAAG
A,AGAAGAAGAAGATGAAGAAG
78817.92
7
131933625
rs200906513
AGAAG
A,AAAG
110421.10
7
131933626
.
G
GAA
31999.70
7
131933628
rs66487918
AG
A
880509.95
7
131933629
rs201879695
G
GAA
3422882.43
7
131933632
.
G
GAA,GAAAAGAAGAA
1400833.98
7
131933635
.
G
GAA,GAGGAAGAA
1969318.09
7
131933638
.
G
GAA,GAAGAAGAAGAAGAA
136820.79
7
131933641
.
G
GAA
14210.23
7
131933642
.
A
AAG
61.28
7
131933644
.
G
GAA
5423.79
7
131933646
rs564979835
A
G,AGAG
3739.14
7
131933647
.
G
GAA
335.79
7
131933650
rs10808261
G
A,GAAAAGAAGAAGAAGAAGAAGAAA,GAAA,GAAGAAA,GAAGAAGAAA,GAAGAAAAGAAGAAGAAGAAGAAGAAA
16705047.09
7
131933651
.
A
AAG,AAGAAG,AAGAAAAGAAGAAGAAG
11261.71
7
131933652
.
AATAT
A
175
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
7
131933589
.
AGAAGAAG
AGAAGAGG
.
7
131933589
.
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
A
.
7
131933590
.
G
A
.
7
131933593
.
GAA
GAG
.
7
131933595
rs796754443
A
G
.
7
131933595
.
AG
GG
.
7
131933598
rs575732388
A
G
.
7
131933598
.
AG
A
.
7
131933601
.
AG
A
.
7
131933601
.
AGAAGAAGAAGAAGAAGAAGAAGAAGAAG
A
.
7
131933602
.
G
GA
.
7
131933604
rs58981838
A
G
.
7
131933604
.
AG
A
.
7
131933607
rs188096022
A
G
.
7
131933607
rs373741521
AG
A
.
7
131933610
.
A
G
.
7
131933616
rs57592089
A
G
.
7
131933619
.
AG
A
.
7
131933620
.
G
GA
.
7
131933622
rs543507027
A
T
.
7
131933622
.
AG
A
.
7
131933624
.
AAGAAG
AAGAA
.
7
131933625
.
AG
A
.
7
131933625
rs200906513
AGAAG
A
.
7
131933628
.
AG
A
.
7
131933628
rs66487918
AG
AA,A,AGAA
.
7
131933629
rs201879695
G
GAAGAA,GAA
.
7
131933631
rs754567394
AG
A,AGAA
.
7
131933634
.
AG
A
.
7
131933637
.
AG
A
.
7
131933640
.
AG
A
.
7
131933643
.
AG
A
.
7
131933646
rs564979835
A
G
.
7
131933650
rs10808261
G
A,GAAAAGAAGAAGAAGAAGAAGAAA
.
7
131933650
rs149346901
G
GAAAAGAAGAAGAAGAAGAAGAAA,GAAGAAAAGAAGAAGAAGAAGAAGAAA
.