| General information of RDP00691 | |
|---|---|
| Gene Symbol: | LINC02198 |
| RefSeq ID: | NR_130778 |
| Repeat coordinate: | chr5:69013919-69013973 (-) |
| Repeat size: | 18 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.218; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
69013917
rs545288086
ATCTTCTTCT
ATCTTCT,A,ATCT,TTCTTCTTCT,ATCTTCTTCTTCT,ATCTTCTTCTTCTTCT
1369491.34
5
69013920
rs563595750
T
TTCTTCTTCC,A
521906.38
5
69013922
.
C
A
267935.37
5
69013923
.
T
A
267901.68
5
69013928
rs530677369
C
G
15242.75
5
69013932
.
T
A
2991.71
5
69013934
.
C
CTTT
2721.85
5
69013940
.
C
CT
2384.79
5
69013941
.
TTC
T
59054.72
5
69013946
rs752301694
CTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
5675.65
5
69013950
.
TTC
T
16119.23
5
69013953
.
TTC
T
83413.74
5
69013954
.
T
TCTA
83518.88
5
69013955
.
CTTCTTCTTCTTCTTCTTCT
C
83004.16
5
69013956
.
TTCTTCTTCTTCTTCTTCTTTC
TTTCTTCTTCTTCTTCTTTC,T
11535.49
5
69013958
.
CTTCTTCTTCTTCTTCT
C
16471.85
5
69013959
.
TTCTTCTTCTTCTTCTTTC
T,TTTCTTCTTCTTCTTTC
25357.98
5
69013961
.
CTTCTTCTTCTTCT
C
29227.58
5
69013962
.
TTCTTCTTCTTCTTTCTTC
TTTCTTCTTCTTTCTTC,TTTC,T
30876.86
5
69013964
.
CTTCTTCTTCT
C,CCTTCTTCT
47895.22
5
69013965
.
TTCTTCTTCTTTCTTC
TTTC,TTTCTTCTTTCTTC,T,TTTTCTTC
109425.88
5
69013967
.
CTTCTTCTTT
CTT,CTTTCTTCTTT,CTTCTTTCTTCTTT,C,CTCTTCTTT
109921.32
5
69013968
rs762301727
TTCTTCTTTCTTC
TTTC,TTTCTTTCTTC,T,TTTTCTTC
287671.95
5
69013970
.
CTTCTTTCTT
CTTCTT,CTTTCTTTCTT,CCTTTCTT,C
294097.64
5
69013971
.
TTCTTTCTTC
TTTC,T
418442.37
5
69013973
rs199628737
CTTTCTTCTTCTTCTTCTTCTTCT
CTTCTTCTTCTTCTTCTTCTTCT,TTTTCTTCTTCTTCTTCTTCTTCT,CCTTCTTCTTCTTCTTCT,C,CCTTCTTCTTCTTCTTCTTCT
557668.29
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
69013917
rs540482635
ATCT
A
.
5
69013917
rs763900332
ATCTTCT
A
.
5
69013917
.
ATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
A
.
5
69013920
rs563595750
T
A
.
5
69013928
rs530677369
C
G
.
5
69013935
.
T
A
.
5
69013940
.
C
CT
.
5
69013946
rs752301694
CTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
.
5
69013947
.
T
C
.
5
69013950
.
T
C
.
5
69013950
.
TT
TC
.
5
69013952
.
C
CT
.
5
69013954
.
T
C
.
5
69013955
.
C
T
.
5
69013955
.
C
CT
.
5
69013956
.
T
C
.
5
69013958
.
C
CT
.
5
69013959
.
TTC
T
.
5
69013961
.
C
CT
.
5
69013962
.
TTC
T
.
5
69013964
.
C
CT
.
5
69013965
.
T
C
.
5
69013967
.
C
CT
.
5
69013968
.
T
C,G
.
5
69013968
.
TTC
TCT,T
.
5
69013968
rs774265261
TTCTTCTTTC
T
.
5
69013968
rs762301727
TTCTTCTTTCTTC
T
.
5
69013970
.
C
T
.
5
69013971
.
T
C
.
5
69013973
rs199628737
C
T
.
5
69013973
.
CT
TC
.
5
69013973
rs200700635
CT
CC,C
.