| General information of RDP00689 | |
|---|---|
| Gene Symbol: | ERC2 |
| RefSeq ID: | NR_132749 |
| Repeat coordinate: | chr3:55720145-55720241 (-) |
| Repeat size: | 32 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.045; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
3
55720131
rs769914231
CTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
CTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT,C,CTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT,TTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
136792.84
3
55720136
.
CTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCT,CTCTTCTTCT,CTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
292292.66
3
55720143
rs527865726
CTCTTCTTCTTCTTCTTCTTCTTCT
TTCTTCTTCTTCTTCTTCTTCTTCT,CTCT,CTCTTCTTCTTCTTCT,C,CTCTTCT
543615.74
3
55720145
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT,C,CCTTCTT,CCTT
527206.68
3
55720146
rs184348960
T
C
836131.51
3
55720148
.
CTTCTTCTTCTTCTTCTTCTTCTTCT
CTCTTCTTCT,CTCT,C,CTCTTCTTCTTCT,CTCTTCT
343438.78
3
55720149
.
T
C
393198.18
3
55720150
.
T
A
392886.57
3
55720155
.
T
C
373615.60
3
55720162
.
T
C
311491.42
3
55720164
.
T
C
312733.06
3
55720172
.
C
T
119299.42
3
55720176
rs868816093
T
C
64592.01
3
55720178
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
49671.45
3
55720181
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
24856.65
3
55720182
rs865947181
T
TCTCTCTC
40488.40
3
55720185
rs867728468
T
TC
16875.83
3
55720187
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
17100.24
3
55720190
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
11430.19
3
55720191
.
T
TCTC,TCTCTC
22063.23
3
55720193
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
3817.21
3
55720194
.
T
TCTC,TC
6355.34
3
55720196
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
15394.89
3
55720197
.
T
C
23484.51
3
55720199
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
31311.03
3
55720200
rs868725061
T
TC,C
61435.22
3
55720201
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
27929.92
3
55720202
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCTTCTTCTTCT
39271.62
3
55720203
rs11707337
T
TCTCTC,C,TCTC
126172.17
3
55720204
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
35260.86
3
55720205
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
47123.59
3
55720206
rs11707340
T
C
80423.58
3
55720208
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT,CTCT,CTCTTCT
60882.03
3
55720209
rs71617286
T
TCTCTC
62076.21
3
55720210
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
54699.17
3
55720211
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCTTCTTCTTCTTCTTCTTCTTCT
68462.18
3
55720212
.
T
TC
66161.87
3
55720214
.
CTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCTTCTTCTTCTTCTTCTTCT
74227.67
3
55720215
.
T
TC
75877.71
3
55720217
.
CTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCTTCTTCTTCTTCTTCT
86338.21
3
55720218
.
T
TCTC
86842.94
3
55720219
.
TCTTCTTCTTCTTCTTCTTC
T,TTTC
86060.38
3
55720220
.
CTTCTTCTTCTTCTTCTTCT
C,CTCTTCTTCTTCTTCTTCT,CTCT
98386.81
3
55720221
.
T
TC
93722.16
3
55720222
.
TCTTCTTCTTCTTCTTC
T,TTTC
95382.29
3
55720223
.
CTTCTTCTTCTTCTTCT
C,CTCTTCTTCTTCTTCT,CTCT
95876.73
3
55720224
.
T
TC
97011.05
3
55720225
.
TCTTCTTCTTCTTC
TTTC,T
91920.19
3
55720226
.
CTTCTTCTTCTTCT
C,CTCT,CTCTTCTTCTTCT
100630.11
3
55720228
.
TCTTCTTCTTC
T
95495.88
3
55720229
.
CTTCTTCTTCT
C,CTCT
100164.90
3
55720232
.
CTTCTTCT
CTCT,C
102198.04
3
55720235
.
CT
C
96423.82
3
55720236
.
T
TC
92535.33
3
55720239
.
T
TC,TTCTCTC,TTC,TTCTC,TTCTCTCTC
313429.66
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
3
55720144
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTC
.
3
55720146
rs184348960
T
C
.
3
55720158
.
T
C
.
3
55720161
.
T
C
.
3
55720164
.
T
C
.
3
55720167
.
T
C
.
3
55720170
.
T
C
.
3
55720173
.
T
C
.
3
55720176
.
T
C
.
3
55720177
.
T
C
.
3
55720179
.
T
C
.
3
55720180
.
T
C
.
3
55720182
.
T
C
.
3
55720183
.
T
C
.
3
55720186
.
T
C
.
3
55720189
.
T
C
.
3
55720192
rs11707336
T
C
.
3
55720194
.
T
C
.
3
55720195
.
T
C
.
3
55720197
.
T
C
.
3
55720200
.
T
C
.
3
55720203
rs11707337
T
C
.
3
55720206
rs11707340
T
C
.
3
55720209
rs71617286
T
C
.
3
55720233
.
T
TC
.
3
55720236
.
T
TC
.
3
55720237
.
T
C
.
3
55720238
.
C
T
.
3
55720238
.
CT
CC,C
.
3
55720239
.
T
TC
.
3
55720241
.
C
CT
.