| General information of RDP00688 | |
|---|---|
| Gene Symbol: | LINC01687 |
| RefSeq ID: | NR_109959 |
| Repeat coordinate: | chr21:22034847-22034925 (-) |
| Repeat size: | 26 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.034; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
21
22034836
.
CTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCT
CTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCT,CTCTTCTTTTTCTTCTTCTTCTTCTTCTTCT,CTCTTCTTCTTCTTCTTCT,CTCTTCTTCTTCT,CTCTTCTTCTTCTTCT,C
5972.21
21
22034843
.
TCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,TTTCTTCTTCTTCTTCTTCTTCTTC,T
13590.03
21
22034845
.
TTTTTCTTCTTCTTCTTC
TTTCTTC,T,TTTC,TTTCTTCTTCTTC,TTTCTTCTTC
12066.22
21
22034847
rs201352134
TTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTCTTCTTCTTCTTCTTCTTC,TTTCTTC,TTTCTTCTTCTTCTTC,T,TTTCTTCTTCTTC,TTTCTTCTTCTTCTTCTTC
2879735.73
21
22034848
.
T
G
3910589.84
21
22034849
.
TC
T
3932057.88
21
22034850
rs868383079
C
T
3933040.75
21
22034851
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTCTTCTTCTTCTTCTTCTTCTTCTTC,TTTC,T
3864483.57
21
22034856
rs867847937
C
T
3685671.73
21
22034859
rs868297170
C
T
3417890.73
21
22034862
.
C
T
3124211.06
21
22034864
.
TC
T
2752030.15
21
22034865
rs866947473
CTT
TTT,C
2755588.82
21
22034866
.
T
C
2405815.78
21
22034868
rs539415182
CTTCTTCTTCTTCT
TTTCTTCTTCTTCT,C
2397792.69
21
22034871
rs546893843
C
T,G,A
1964853.61
21
22034874
rs542572492
C
T
1657305.08
21
22034877
rs368850965
C
T,G
1213801.15
21
22034880
rs199838473
C
T,G
845929.47
21
22034881
rs537920916
T
C
500379.38
21
22034884
rs796431849
T
C
285885.94
21
22034887
rs539821724
T
C
123558.85
21
22034890
.
T
C
54635.77
21
22034892
rs573447222
CTT
C
51775.37
21
22034893
rs200823957
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC,T
7856.94
21
22034895
.
CTT
C
4634.87
21
22034896
rs369791413
T
C
5661.64
21
22034898
.
CTTCTTCTTCTTCTTCTTCTTCT
C
2276.67
21
22034899
rs201772294
T
C
7402.99
21
22034901
.
CTT
C
3299.34
21
22034902
rs199939461
T
C
9180.04
21
22034904
.
CTTCTTCTTCTTCTTCT
CCTTCTTCTTCTTCT,CTCTTCTTCTTCTTCT,C
8844.89
21
22034905
.
T
C
13113.63
21
22034907
.
CTTCTTCTTCTTCT
CCTTCTTCTTCT,CTCTTCTTCTTCT,C,CCTTCT
20728.34
21
22034908
.
T
C
24784.43
21
22034910
.
CTTCTTCTTCTTCT
CTCTTCTTCTTCT,CCTTCTTCT,CCTTCTTCTTCT,CTCT,C
33920.35
21
22034911
rs866873803
TTCTTCTTCTTCTTCCTCTTCCTCC
CTCTTCTTCTTCTTCCTCTTCCTCC,T
38100.42
21
22034913
.
CTTCTTCT
CCTTCT,C
50651.05
21
22034914
.
TTCTTCTTCTTCC
CTCTTCTTCTTCC,T
52007.86
21
22034915
rs146459197
T
C,TCTTCTC,TCTC,TCTTCTTCTC,TCTTCTTCTTCTC
59956.89
21
22034916
.
CTTCT
CCT,C
60725.27
21
22034917
rs866305417
T
C
61709.41
21
22034919
.
CTTCT
CTCT,C
59584.72
21
22034920
rs866645574
TTCTTCC
CTCTTCC,TTCTTCCTCTTCC,TTCCTCTTCC,T
77105.53
21
22034922
.
C
A
3494.96
21
22034923
rs868857470
TTCC
CTCC,T
3769.73
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
21
22034845
.
TTTTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TTTTTCTTCTTCTGCTTCTTCCTCTTCTTCC
.
21
22034847
rs796304696
TTTCTTCTTCTTCTTC
T
.
21
22034847
rs757664455
TTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
.
21
22034850
.
C
T
.
21
22034851
.
T
C
.
21
22034852
rs199673703
T
G
.
21
22034854
.
T
C
.
21
22034855
.
T
C,G
.
21
22034856
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTTTCTTCTGCTTCTTCCTCTTCTTCCTCTTCTT
.
21
22034857
.
T
C
.
21
22034857
.
TT
TC
.
21
22034858
.
T
C,G
.
21
22034858
.
TCT
GCT
.
21
22034859
.
C
T
.
21
22034860
rs200815680
T
C
.
21
22034861
.
T
C,G
.
21
22034861
.
TC
T,TT
.
21
22034862
.
CTTC
CTT
.
21
22034863
.
T
C
.
21
22034864
.
T
C,G
.
21
22034864
.
TC
T,TT
.
21
22034866
.
T
C
.
21
22034867
.
T
C,G
.
21
22034867
rs539415182
TC
T,TT
.
21
22034868
.
CTT
CTG
.
21
22034868
.
CTTCTTCTTCTTCTTCTTC
CTCCTTCTTCTTCTTCTT
.
21
22034869
rs201369034
T
C
.
21
22034869
.
TTCTT
TCCTC
.
21
22034869
.
TTCTTCT
TTCTTCC
.
21
22034870
.
T
C,G
.
21
22034870
.
TCTTCTTCT
GCTTCTTCC
.
21
22034871
rs546893843
C
T
.
21
22034871
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
CTCCTTCTTCTTCTTCTTTTCTTCTGCTTCTTC
.
21
22034872
rs566604289
T
C
.
21
22034872
.
TTCTTCTT
TGCTTCTT
.
21
22034873
.
T
C,G
.
21
22034874
rs542572492
C
T
.
21
22034875
.
T
C
.
21
22034875
.
TTCTTCT
CTCTTCT
.
21
22034876
rs796900190
T
G
.
21
22034876
.
TCTTCT
TCTTCC
.
21
22034877
rs368850965
C
T
.
21
22034877
.
CTTCTTCTTCT
CTTCTTCTTT
.
21
22034878
.
T
C
.
21
22034878
.
TTCT
CTCT
.
21
22034878
.
TTCTTCT
C
.
21
22034879
.
T
G
.
21
22034879
rs199838473
TC
T,TT
.
21
22034881
rs537920916
T
C
.
21
22034882
.
T
C,G
.
21
22034883
rs200154716
C
T
.
21
22034883
.
CTTC
CTTT
.
21
22034884
rs796431849
T
C
.
21
22034884
.
TTCTTCT
TTCTTT
.
21
22034885
.
T
C
.
21
22034886
rs577584160
C
T
.
21
22034886
.
CTTCTTCTT
CTTTTCTT
.
21
22034887
rs539821724
T
C
.
21
22034887
.
TTCTTC
TTCCTC
.
21
22034887
.
TTCTTCTTCT
CTCTTCTTCC
.
21
22034888
.
T
G
.
21
22034888
.
TC
T
.
21
22034888
rs188665278
TC
T,TT
.
21
22034889
.
CT
CC
.
21
22034889
.
CTTCTTCTT
CTTCTGCTT,TTCTTCTG
.
21
22034890
.
T
C
.
21
22034891
.
T
G
.
21
22034892
rs573447222
C
T
.
21
22034892
.
CTTCTTCTTC
CTTCTGCTTC
.
21
22034893
rs200823957
T
C
.
21
22034894
.
T
C,G
.
21
22034894
.
TCT
GCT
.
21
22034895
.
C
T
.
21
22034896
rs369791413
T
C
.
21
22034897
.
T
C,G
.
21
22034897
.
TCT
GCT
.
21
22034897
.
TCTTC
GCTTC
.
21
22034898
.
C
T
.
21
22034899
rs201772294
T
C
.
21
22034900
.
T
C,G
.
21
22034900
.
TC
TT
.
21
22034900
.
TC
T,TT
.
21
22034901
.
CTTCTTCTT
CTTCAGTCTT
.
21
22034902
rs199939461
T
C
.
21
22034903
.
T
C
.
21
22034904
.
C
T
.
21
22034905
.
T
C
.
21
22034905
.
TTCTT
CTCTT
.
21
22034905
.
TTCTTC
CTCTTC
.
21
22034906
.
T
C
.
21
22034907
.
C
T
.
21
22034907
.
CTTCTTCTTCTTCTTCTTCCTCTTC
TTTCTTCTTCTTCTTCTTCCTCTTC
.
21
22034908
.
T
C
.
21
22034909
.
T
C,G
.
21
22034909
.
TC
T,TT
.
21
22034911
.
T
C
.
21
22034911
.
TTCT
TTCC
.
21
22034912
.
T
C
.
21
22034913
.
C
T
.
21
22034914
.
T
C
.
21
22034914
.
TTC
CTC
.
21
22034915
rs146459197
T
C
.
21
22034916
.
C
T
.
21
22034917
.
T
A,C
.
21
22034917
.
TTCTT
TCCTT
.
21
22034918
.
T
C,G
.
21
22034920
.
T
A,C
.
21
22034921
.
T
C
.
21
22034923
.
T
C
.
21
22034925
rs573688464
C
T
.