| General information of RDP00687 | |
|---|---|
| Gene Symbol: | MIR548AI |
| RefSeq ID: | NR_039672 |
| Repeat coordinate: | chr16:51047151-51047211 (+) |
| Repeat size: | 20 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.000; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
16
51047082
rs550867392
AAATAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAAG
AAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAAG,GAATAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAAG,A
155621.57
16
51047146
rs78095182
AAGAAAG
GAGAAAG,A,AAAAG
979568.14
16
51047150
.
AAG
AGGAG,AGGAGAAGGAG,A
71887.73
16
51047151
rs200733940
AG
GG,A
77317.87
16
51047152
.
G
GA,A
42476.14
16
51047155
.
G
GGAGAAGA,GA,GAAGA
75843.25
16
51047156
.
AAG
A,GAG
32475.06
16
51047158
.
G
GA,T
40187.73
16
51047159
.
AAG
A
34928.34
16
51047162
.
A
AAGG
7846.22
16
51047163
.
A
G
6577.97
16
51047170
.
G
A
566.21
16
51047172
rs201718946
A
G
2436.35
16
51047175
.
A
G
7184.96
16
51047178
.
A
G
371.29
16
51047180
.
A
G
592.94
16
51047181
.
A
G
3233.06
16
51047184
.
A
G
6077.16
16
51047185
.
G
C,T
5922.91
16
51047187
.
A
G
12611.55
16
51047188
.
G
T
97.08
16
51047189
.
A
G
3369.87
16
51047190
.
A
G
9089.88
16
51047192
.
A
C,G
16696.10
16
51047193
.
A
G
15203.01
16
51047194
.
G
GC
98.81
16
51047195
rs796813837
AAGAAGAAGAAGAAGAAGCAGAAGC
CAGAAGAAGAAGAAGAAGCAGAAGC,GAGAAGAAGAAGAAGAAGCAGAAGC,AAGAAGC,A
28620.69
16
51047196
.
A
G
22455.37
16
51047197
.
G
GC
2504.26
16
51047198
rs74210690
AAGAAGAAGAAGAAGCAGAAGC
CAGAAGAAGAAGAAGCAGAAGC,A,AAGAAGC,GAGAAGAAGAAGAAGCAGAAGC
52689.04
16
51047199
.
A
G
24456.30
16
51047200
.
G
GC
16756.87
16
51047201
rs796941640
AAGAAGAAGAAGCAGAAGC
A,CAGAAGAAGAAGCAGAAGC,AGCAGCAGAAGAAGAAGCAGAAGC,AGCAGAAGAAGAAGCAGAAGC,AAGAAGC
107949.32
16
51047202
.
A
G
69338.42
16
51047203
.
G
GC
76207.94
16
51047204
rs771634804
AAGAAGAAGCAGAAGC
CAGAAGAAGCAGAAGC,AAGAAGC,A,AGCAGCAGAAGAAGCAGAAGC,GAGAAGAAGCAGAAGC
190342.06
16
51047205
.
A
G
100561.36
16
51047206
.
G
GC
120766.08
16
51047207
rs372290615
AAGAAGCAGAAGC
A,AAGAAGC,CAGAAGCAGAAGC,AGCAGCAGCAGAAGCAGAAGC,AGCAGAAGCAGAAGC
399429.46
16
51047208
.
A
G
239930.73
16
51047209
.
G
GC
296678
16
51047211
.
A
C,AGAAGAG
1301514.47
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
16
51047128
.
GAGAAGGAGAAGGAGAAGAAGAAAGA
AAGAAGAGGAAGAAGAAGAAGGAAGA
.
16
51047147
.
AGAAAG
GGAAG
.
16
51047149
.
AAAGAAGA
AGGAAGA
.
16
51047149
.
AAAGAAGAA
AAGAAGAA
.
16
51047150
.
AAGA
AGG
.
16
51047152
.
G
A
.
16
51047153
rs75277133
A
G
.
16
51047154
.
A
G
.
16
51047155
.
GAAG
GAAAG
.
16
51047157
.
A
G
.
16
51047159
.
A
G
.
16
51047160
.
A
AG,G
.
16
51047160
.
AGAA
AGAG
.
16
51047160
.
A
AG
.
16
51047161
.
G
GA
.
16
51047162
.
A
G
.
16
51047163
.
A
G
.
16
51047163
.
AGA
GGA
.
16
51047165
.
A
G
.
16
51047166
.
A
G
.
16
51047166
.
AGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGGAAGAAGA
.
16
51047167
.
GAAGAAGAAG
GAAGAGGAAG
.
16
51047168
.
A
G
.
16
51047169
.
A
G
.
16
51047170
.
GAAGAAGAA
GAAGAGGAA
.
16
51047170
.
G
GA
.
16
51047171
.
A
G
.
16
51047172
rs201718946
A
G
.
16
51047172
.
AGAAGAAGA
AGAGGAAGA
.
16
51047172
.
A
AG
.
16
51047173
.
GAAGAAGA
GAGGAAGA
.
16
51047174
.
A
G
.
16
51047174
.
AA
AAG
.
16
51047175
.
A
G
.
16
51047175
.
AG
GG
.
16
51047175
.
A
AG
.
16
51047176
.
GAA
G
.
16
51047177
.
A
G
.
16
51047178
.
A
G
.
16
51047178
.
A
AG
.
16
51047181
.
A
G
.
16
51047183
.
A
C
.
16
51047183
.
AAGAAGAAGA
AAGGAAGA
.
16
51047184
.
A
G
.
16
51047184
.
AGAAG
AGAGG
.
16
51047186
.
A
C,G
.
16
51047187
.
A
AG,G
.
16
51047187
.
AGAA
AGGAA
.
16
51047187
.
A
AG
.
16
51047188
.
GAA
G,GAG
.
16
51047188
.
GAAGAA
GGAA
.
16
51047188
.
GAAGAAG
GGAAG
.
16
51047188
.
GAA
GAG,G
.
16
51047189
.
A
C
.
16
51047190
.
A
G
.
16
51047190
.
A
AG
.
16
51047192
.
A
C
.
16
51047193
.
A
AG,G
.
16
51047193
.
A
AG
.
16
51047194
.
GAA
G
.
16
51047195
rs796813837
A
C
.
16
51047196
.
A
G
.
16
51047198
rs74210690
A
C
.
16
51047199
.
A
G
.
16
51047201
rs796941640
A
C
.
16
51047202
.
A
G
.
16
51047203
.
GAAGA
GCAGC
.
16
51047204
rs771634804
A
C
.
16
51047205
.
A
G
.
16
51047207
rs372290615
A
C
.
16
51047207
.
AAGAAGCAGA
AAGAAGAAGA
.
16
51047207
rs796979494
AAGAAGC
A
.
16
51047208
.
A
G
.
16
51047209
.
GAAGCAGA
GAAGAAGA
.
16
51047209
.
GAAGCAGAAGCAGCAG
GAAGAAGAAGCAGCAG
.
16
51047210
rs377106090
A
C
.
16
51047210
.
AAGCAGA
CAGCAGC
.
16
51047210
.
AAGCAGAAGC
A,AAGA,CAGCAGCAGC
.
16
51047210
.
AAGCAGAAGCAGCAGC
CAGCAGCAGCAGCAGC
.
16
51047210
.
AAGC
AAGA,A
.
16
51047211
.
A
G
.
16
51047211
.
AGCAGAAGC
AGA,AGAAGAAGA,AGCAGCAGC
.