| General information of RDP00678 | |
|---|---|
| Gene Symbol: | CXXC4 |
| RefSeq ID: | NR_132741 |
| Repeat coordinate: | chr4:104491308-104491329 (-) |
| Repeat size: | 7 |
| Repeat region: | intron |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.992; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
104491313
rs376897811
C
T
.
4
104491314
.
GCCGCCGCCGCCGCCGCCA
G
.
4
104491325
rs370109633
C
T
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
104491304
rs762631698
TGCTGCCGCCGCC
TGCTGCCGCTGCCGCCGCC,T,TGCC,CGCTGCCGCCGCC
60256.36
4
104491307
rs532524986
TGCCGCCGCCGCCGCCGCCGCC
TGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCCGCC,TGCC,T,TGCCGCCGCCGCC
496855.74
4
104491312
rs563428404
C
A,CCGA
243253.97
4
104491313
rs376897811
C
T
173343.72
4
104491314
.
GCCGCCGCCGCCGCCGCCA
ACCGCCGCCGCCGCCGCCA,G
164611.33
4
104491320
rs756695587
G
GCCGCCGCCGCCA,A
94878.22
4
104491323
rs758745145
G
GCCGCCGCCA
80456.43
4
104491325
rs370109633
C
T
225247.85
4
104491326
rs745412579
G
A,GCCGCCA
36172.68
4
104491327
.
C
G
27867.56
4
104491329
rs771736348
GCCA
ACCA,G,GCCACCA
7351.97
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
104491307
rs532524986
TGCCGCCGCCGCCGCCGCC
TGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCC,TGCCGCCGCC,T
42412.55
4
104491312
rs563428404
C
A
10246.35
4
104491317
.
G
GCCGCCGCCGCCGCCA
5042.22
4
104491320
rs756695587
G
GCCGCCGCCGCCA
4942.40
4
104491325
rs370109633
C
T
8958.53
4
104491326
rs745412579
G
GCCGCCA
343.43
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
104491304
.
TGCTGCCGCCGCC
CGCTGCCGCCGCC,T,TGCTGCCGCTGCCGCCGCC
.
4
104491304
rs765991161
TGCTGCCGCCGCC
T
.
4
104491307
rs757791031
TGCC
T
.
4
104491307
rs756496042
TGCCGCCGCC
T
.
4
104491307
.
TGCCGCCGCCGCCGCC
T,TGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCC
.
4
104491307
rs764298185
TGCCGCCGCCGCCGCCGCC
T
.
4
104491307
rs779167033
TGCCGCCGCCGCCGCCGCCGCC
T,TGCC,TGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCCGCC
.
4
104491312
rs563428404
C
A
.
4
104491313
rs376897811
C
T
.
4
104491320
rs756695587
G
A
.
4
104491320
rs745913826
G
GCCGCCGCCGCCA,GC
.
4
104491322
.
C
CG
.
4
104491323
rs758745145
G
GCCGCCGCCA,GC
.
4
104491325
rs370109633
C
CG,T
.
4
104491325
.
C
CG
.
4
104491326
rs745412579
G
A
.
4
104491328
.
C
CG
.
4
104491329
rs771736348
G
A
.