| General information of RDP00661 | |
|---|---|
| Gene Symbol: | LOC101929705 |
| RefSeq ID: | NR_125864 |
| Repeat coordinate: | chr6:44002767-44002794 (-) |
| Repeat size: | 9 |
| Repeat region: | intron |
| Repeat unit: | CCG |
| Repeat conservation: | PhastCons_score: 0.839; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
44002772
~rs79668397
G
GC
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
44002766
rs778896183
CGCGGCGGCGGCGGCG
CGCGGCGGCG,CGCGGCGGCGGCGGCGGCG,CGCGGCGGCGGCG,CGCGGCGGCGGCGGCGGCGGCG,C,CGCGGCG
4630399.89
6
44002768
.
CG
C
3338240.75
6
44002769
rs759830659
G
A
3241172.34
6
44002771
rs765565822
C
T
2576555.93
6
44002772
.
G
A
2574224.03
6
44002773
rs775564897
G
C
304507.35
6
44002778
rs763143047
GGC
AGC,G
131983.97
6
44002779
rs764050275
G
A
94792.64
6
44002780
rs751651293
C
T,A
94221.87
6
44002781
.
G
A
93360.32
6
44002783
.
C
G,A
1350.52
6
44002784
rs533821272
G
A
12842.19
6
44002786
rs750309395
C
T
371.81
6
44002788
rs755847593
G
A
175.70
6
44002791
rs779804974
G
T
949.64
6
44002792
.
C
G
327.86
6
44002793
.
G
GGC,A
1236.50
6
44002794
rs771454938
G
A,GCGGC
3749.03
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
44002766
rs778896183
CGCGGCGGCGGCGGCG
CGCGGCGGCG,CGCGGCGGCGGCGGCGGCGGCG,CGCGGCGGCGGCGGCGGCG,CGCGGCG,CGCGGCGGCGGCG,C
3077554.92
6
44002768
.
C
A
1250081.22
6
44002774
.
C
A
147931.04
6
44002783
.
C
G
128.49
6
44002784
rs533821272
G
A
1237.84
6
44002789
.
C
A
152.59
6
44002793
.
G
A
194.89
6
44002794
rs771454938
G
A
924.16
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
44002766
rs571541469
CGCG
C,CGCGGCG
.
6
44002766
rs755059764
CGCGGCG
C,CGCGGCGGCG,CGCGGCGGCGGCG
.
6
44002766
rs778441455
CGCGGCGGCG
C
.
6
44002766
rs747313073
CGCGGCGGCGGCGGCG
C,CGCGGCG,CGCGGCGGCG,CGCGGCGGCGGCG,CGCGGCGGCGGCGGCGGCG,CGCGGCGGCGGCGGCGGCGGCG,CGCGGCGGCGGCGGCGGCGGCGGCG
.
6
44002769
rs759830659
G
A
.
6
44002771
rs765565822
C
T
.
6
44002771
.
C
CG
.
6
44002773
rs775564897
G
C
.
6
44002776
.
G
GC
.
6
44002778
rs763143047
G
A
.
6
44002779
rs764050275
G
A
.
6
44002780
rs751651293
C
A,T
.
6
44002782
.
G
C
.
6
44002783
.
C
A
.
6
44002784
rs533821272
G
A
.
6
44002786
rs750309395
C
T
.
6
44002788
rs755847593
G
A
.
6
44002791
rs779804974
G
A
.
6
44002794
rs748857617
G
A
.
6
44002794
rs771454938
G
GCGGC
.