| General information of RDP00648 | |
|---|---|
| Gene Symbol: | PTENP1 |
| RefSeq ID: | NR_023917 |
| Repeat coordinate: | chr9:33677386-33677404 (-) |
| Repeat size: | 6 |
| Repeat region: | exon |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.008; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
33677366
.
TTCAGGCCGGGCCGGGCCGGGCCGCCGCCGCCGCCGCCGTCTCTGTCTC
T
100
9
33677385
.
GGCC
CGCC,GGCCGCC,GGCCGCCGCC,G
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
33677366
rs549842458
TTCAGGCCGGGCCGGGCCGGGCCGCCGCCGCCGCCGCCGTCTCTGTCTC
T
72206.46
9
33677385
rs11794630
GGCC
G,GGCCGCC,GGCCGCCGCC,GGCCGCCGCCGCC,GGCCGCCGCCGCCGCC
1538864.72
9
33677388
.
C
CGG
841079.94
9
33677395
.
G
GCCGCCA
60298.01
9
33677402
.
C
CCGT
62176.71
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
33677366
rs373541657
TTCAGGCCGGGCCGGGCCGGGCCGCCGCCGCCGCCGCCGTCTCTGTCTC
T
.
9
33677385
.
GGCC
CGCC,G,GGCCGCC,GGCCGCCGCC
.
9
33677385
rs375997845
GGCC
G
.
9
33677398
rs113609500
G
A
.