| General information of RDP00628 | |
|---|---|
| Gene Symbol: | SMG1P3 |
| RefSeq ID: | NR_027155 |
| Repeat coordinate: | chr16:21501824-21501854 (-) |
| Repeat size: | 10 |
| Repeat region: | exon |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.991; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
16
21501814
.
TGCCGTTGGTGCCGCCGCC
T,TGCC
1355.59
16
21501823
rs752728251
TGCCGCCGCC
TGCCGCCGCCGCC,T,TGCC,TGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCC,TGCCGCC
22463918.91
16
21501824
.
GCC
G
17557747.81
16
21501826
.
C
CGCCGCT
17548392.43
16
21501827
.
GCCGC
G
17557636.75
16
21501828
.
C
T,G
17554789.17
16
21501829
.
C
T
17554201.36
16
21501830
.
G
A
17404115.12
16
21501831
.
C
G
17411784.46
16
21501832
.
C
T
17410095.93
16
21501833
.
G
A
2027084.76
16
21501835
.
C
T
1969472.72
16
21501836
.
G
A
961646.97
16
21501837
.
C
A
923570.03
16
21501841
.
C
T
757418.54
16
21501842
rs567581110
G
A,GCCA
376628.65
16
21501843
.
C
T
343763.63
16
21501844
.
CGCCGCCGCCGCT
C,CGCAGCCGCCGCCGCT
344736.75
16
21501845
rs537724692
GC
AC,G
3011.76
16
21501847
rs868415368
CGCCGCCGCT
C
2488.50
16
21501848
.
GCCGCC
G
1833.68
16
21501850
.
C
T,CGCT
2814.75
16
21501853
.
C
CGCCGCCGCCGCT,T,CGCCGCCGCCGCCGCT,CGCCGCT
3710.02
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
16
21501823
.
TGCCGCCGCC
T
.
16
21501823
.
TGCCGCCGCCGCC
T
.
16
21501823
.
TGCCGCCGCCGCCGCCGCC
T,TGCCGCCGCC
.
16
21501823
.
TGCC
T
.
16
21501823
rs79872288
TGCCGCC
T,TGCC,TGCCGCCGCC
.
16
21501823
rs745889959
TGCCGCCGCC
T,TGCC,TGCCGCC,TGCCGCCGCCGCC,TGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCC
.
16
21501823
.
TGCCGCCGCCGCC
T,TGCC
.
16
21501823
.
TGCCGCCGCCGCCGCC
T,TGCCGCC
.
16
21501823
.
TGCCGCCGCCGCCGCCGCC
T,TGCCGCCGCC
.
16
21501823
.
TGCCGCCGCCGCCGCCGCCGCC
T
.
16
21501824
.
GCCGCCGCCGCCG
GCCG
.
16
21501824
.
GCCGCCGCCGCCGCCGCCGCCG
GCCGCCGCCGCCGCCG
.
16
21501824
.
GCCGCCGCCGCCGCCGCCGCCGCCG
GCCGCCGCCGCCGCCG
.
16
21501824
.
GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCAG
GCCGCCGCCGCCGCCGCCGCCGCTCAG
.
16
21501827
.
GCCGCCGCCG
G
.
16
21501832
.
C
T
.
16
21501842
rs567581110
G
A
.
16
21501845
rs537724692
G
T
.
16
21501845
rs79589443
GCCGCCGCCGC
G
.
16
21501848
.
G
T
.
16
21501850
.
C
A
.