| General information of RDP00618 | |
|---|---|
| Gene Symbol: | PEA15 |
| RefSeq ID: | NR_123724 |
| Repeat coordinate: | chr1:160205421-160205439 (+) |
| Repeat size: | 6 |
| Repeat region: | exon |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.524; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Major Depressive Disorder | NR_123724 | 0.31 | 1 | 0 | PSYGENET |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
160205401
rs762397871
AGGCGGCGGCGGCGGCAGAAGC
AGGCGGCGGCGGCGGCAGAAGCGGCGGCGGCGGCGGCAGAAGC,AGGCGGCGGCGGCAGAAGC,AGGCGGCAGAAGC,A,CGGCGGCGGCGGCGGCAGAAGC
3731.73
1
160205420
rs534507123
AGCGGCG
AGCGGCGGCG,AGCGGCGGCGGCG,AGCG,A,AGCGGCGGCGGCGGCGGCG
10353936.64
1
160205422
.
C
T
4529.60
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
160205401
rs762397871
AGGCGGCGGCGGCGGCAGAAGC
A
.
1
160205410
.
CGGCGGCAGAAGCGGCGGCGGCGGC
CGGCGGCAGAAGCGGCGGCGGCGGCGGC
.
1
160205418
.
GAAGCGGC
GAAGCGGCGGC
.
1
160205419
.
AAGC
AAGCGGC
.
1
160205419
.
AAGCGGCGGCGGCGGCG
AAGCGGCGGCGGCGGCGGCG
.
1
160205419
.
AAGCGGCGGCGGCGGCGGCG
AAGCGGCGGCGGCGGCGGCGGCG
.
1
160205420
.
AGC
AGCGGC
.
1
160205420
.
AGCGGCGGCGG
AGCGGCGGCGGCGG
.
1
160205421
.
GCG
GCGGCG
.
1
160205422
.
C
CG
.
1
160205425
.
C
CG
.
1
160205427
.
G
GC
.
1
160205428
.
C
G
.
1
160205429
.
G
C
.
1
160205430
rs533615803
G
C
.
1
160205433
rs551678845
G
C
.
1
160205433
.
GCGG
GCGC
.
1
160205438
rs749255720
G
GGCGGGC,GGCG
.
1
160205439
.
G
A
.