| General information of RDP00597 | |
|---|---|
| Gene Symbol: | ZNF474 |
| RefSeq ID: | NM_207317 |
| Repeat coordinate: | chr5:122141095-122141170 (+) |
| Repeat size: | 15 |
| Repeat region: | intron |
| Repeat unit: | TTTTA |
| Repeat conservation: | PhastCons_score: 0.183; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
122141166
.
TTTTA
T
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
122141087
.
TTTTTTATTTTTTATTTTATTTTA
T
399.85
5
122141093
.
ATTTTTTATTT
A,GTTTTTTATTT,ATTTTTTTTTTTATTT
1809.19
5
122141095
rs201853082
TTTTTATTTTATTTTATTTTA
TTTTTATTTTATTTTA,T,TTTTTATTTTATTTTATTTTATTTTA,TTTTTATTTTATTTTATTTTATTTTATTTTA,TTTTTA,TTTTTATTTTATTTTATTTTATTTTATTTTATTTTA
583215.95
5
122141100
.
A
T
233884.59
5
122141105
.
ATTTTATTTTATT
A
164832.87
5
122141118
.
TTA
T,GTA
26218.92
5
122141119
.
TA
T
42320.08
5
122141122
.
TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTG
T
37197.33
5
122141123
rs375942007
T
TGAAACAGTC
46904.17
5
122141129
.
TA
T
21380.26
5
122141132
.
TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTG
T
20678.96
5
122141134
.
TA
T
44581.89
5
122141137
.
TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTG
T
44193.34
5
122141139
.
TA
T
62389.05
5
122141140
.
A
T
62993.70
5
122141142
.
TTTATTTTATTTTATTTTATTTTATTTTATTTTTG
T,TCTTATTTTATTTTATTTTATTTTATTTTATTTTTG
61342.82
5
122141143
.
TTA
T,CTA
66557.08
5
122141144
rs758013244
TA
TTTGAA,T,TTTGAAA,TTTGAAACA,TTGAAACA
7423177.95
5
122141145
rs866089813
A
T
7290961.09
5
122141147
rs866807530
TTTATTTTATTTTATTTTATTTTATTTTTG
T
7356109.23
5
122141148
.
TTA
T
7321687.28
5
122141149
.
TA
TTTGAAA,T,GA,TTTGAAACA
7846956.25
5
122141150
.
ATTTTAT
ATTAT,A
7798200.93
5
122141151
.
T
TTTTA
7037971.27
5
122141152
.
TTTATTTTATTTTATTTTATTTTTG
T
7809379.50
5
122141154
.
TA
GA,T,TTTGAAA
7822603.90
5
122141157
.
TTTATTTTATTTTATTTTTG
T
7803210.67
5
122141158
.
TTA
T
7792569.57
5
122141159
.
TA
T
7886282.87
5
122141160
.
AT
A
7888164.30
5
122141161
rs534086210
TTTTATTTTA
T
7742260.92
5
122141162
.
TTTATTTTATTTTTG
T
7867185.98
5
122141163
.
TTA
T
7868141.39
5
122141164
.
TA
T,TTTGAA
8087195.34
5
122141167
.
TTTATTTTTG
T
8074758.95
5
122141168
.
T
G
8068279.01
5
122141169
.
TA
T,GA
8104063.03
5
122141170
rs372698567
A
ATTTTATT
8107011.02
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
122141095
rs201853082
TTTTTATTTTATTTTATTTTATTTTATTTTA
T
.
5
122141103
.
T
C
.
5
122141120
.
A
T
.
5
122141123
rs375942007
T
A
.
5
122141125
rs370080891
A
T
.
5
122141134
.
TA
TT
.
5
122141144
rs758013244
TA
T
.
5
122141147
rs747385514
TTTATTTTATTTTATTTTATTTTATTTTTG
T
.
5
122141161
rs534086210
TTTTATTTTA
T
.
5
122141166
rs564868167
TTTTA
T
.
5
122141168
.
TTATTTTTG
TTATTTTTT
.
5
122141170
rs372698567
A
T
.