| General information of RDP00596 | |
|---|---|
| Gene Symbol: | SPHKAP |
| RefSeq ID: | NM_001142644 |
| Repeat coordinate: | chr2:228080711-228080786 (-) |
| Repeat size: | 15 |
| Repeat region: | intron |
| Repeat unit: | TTTTA |
| Repeat conservation: | PhastCons_score: 0.054; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
228080707
.
CAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
C
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
228080707
rs200294894
CAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
CAAAATAAAAT,C,CAAAATAAAATAAAATAAAATAAAATAAAAT,CAAAATAAAATAAAATAAAATAAAAT,CAAAATAAAATAAAAT,CAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
10633095.40
2
228080722
.
TAAAA
T
8454670.85
2
228080727
rs866699171
TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATA
T
7887865.40
2
228080731
.
A
G
7768293.65
2
228080737
rs867703479
TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATA
T
7727290.16
2
228080740
.
AATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
A
7270935.63
2
228080742
.
T
C
7262339.34
2
228080743
.
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAACC
CAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAACC,A
6527420.86
2
228080747
.
T
C
6513099.36
2
228080748
.
A
C
6374148.86
2
228080750
.
AATAAAATAAAATAAAATAAAATAAAATAAAAT
A,GATAAAATAAAATAAAATAAAATAAAATAAAAT
6371964.47
2
228080751
.
A
G
6362675.47
2
228080752
rs201252241
T
C,G
6385347.95
2
228080753
rs199848533
AAAATAAAATAAAATAAAATAAAATAAAATAAAACC
CAAATAAAATAAAATAAAATAAAATAAAATAAAACC,A
109485.34
2
228080755
.
AATAAAATAAAATAAAATAAAAT
A,GATAAAATAAAATAAAATAAAAT
57006.37
2
228080756
.
A
G
77948.18
2
228080757
.
T
C,G
101710.23
2
228080758
.
AAAATAAAATAAAATAAAATAAAATAAAACC
A,CAAATAAAATAAAATAAAATAAAATAAAACC
96535.79
2
228080760
.
AATAAAATAAAATAAAAT
GATAAAATAAAATAAAAT,A
121509.14
2
228080761
.
A
G
114274.90
2
228080762
.
T
G
140440.16
2
228080763
.
AAAATAAAATAAAATAAAATAAAACC
A
125218.04
2
228080765
.
AATAAAATAAAAT
A,GATAAAATAAAAT
171336.29
2
228080766
.
A
G
179111.60
2
228080767
.
T
G
184184.68
2
228080768
.
AAAATAAAATAAAATAAAACC
A
187871.61
2
228080770
.
AATAAAAT
A,GATAAAAT
188856.87
2
228080771
.
A
G
189532.31
2
228080772
.
T
G
183216.65
2
228080773
.
AAAATAAAATAAAACC
A
241909.70
2
228080774
.
A
AGGG
219703.23
2
228080775
.
AATAAAAT
AAAAAT,A
228872.27
2
228080777
.
T
A,TAAGGGAAA
231090.82
2
228080778
.
AAAATAAAACC
A
154079.63
2
228080782
rs570081142
T
C
156132.11
2
228080783
rs537539078
AAAACC
ACCAAACC,A
157423.88
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
228080707
rs57442116
CAAAATAAAAT
C
.
2
228080707
rs200294894
CAAAATAAAATAAAAT
C
.
2
228080707
.
CAAAATAAAATAAAATAAAATAAAAT
C
.
2
228080707
rs562385038
CAAAATAAAATAAAATAAAATAAAATAAAAT
C
.
2
228080707
rs144347560
CAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
CAAAAT,C
.
2
228080707
.
CAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
C
.
2
228080707
rs796144509
CAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
CAAAAT,CAAAATAAAAT,CAAAATAAAATAAAAT,CAAAATAAAATAAAATAAAAT,C
.
2
228080708
.
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATA
A
.
2
228080708
.
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAA
AA
.
2
228080708
.
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAA
AAA
.
2
228080708
.
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAA
AAAATAAAA
.
2
228080708
.
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
AAAATAAAAT
.
2
228080735
.
AATAAAATA
AATAAAACC
.
2
228080742
.
T
C
.
2
228080743
.
A
C
.
2
228080747
.
T
C
.
2
228080748
.
A
C
.
2
228080749
.
A
T
.
2
228080750
.
A
C
.
2
228080751
.
A
T
.
2
228080752
rs201252241
T
C
.
2
228080752
.
TA
CC
.
2
228080753
rs199848533
A
C
.
2
228080753
.
AAAATAAAATAAAATAAAATAAAATAAAATAAAACC
A
.
2
228080762
.
T
C
.
2
228080770
.
A
G
.
2
228080771
.
A
G
.
2
228080772
.
T
G
.
2
228080774
.
A
AGGG
.
2
228080777
.
T
A
.
2
228080782
rs570081142
T
C
.
2
228080783
rs537539078
A
C
.
2
228080785
rs12997696
A
T
.
2
228080786
.
A
G
.