| General information of RDP00593 | |
|---|---|
| Gene Symbol: | SCUBE1 |
| RefSeq ID: | NM_173050 |
| Repeat coordinate: | chr22:43284763-43284781 (-) |
| Repeat size: | 6 |
| Repeat region: | intron |
| Repeat unit: | GAC |
| Repeat conservation: | PhastCons_score: 0.002; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
22
43284767
.
G
GTCGTCA
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
22
43284761
rs1076946
ATCGTCG
GTCGTCG,ATCG,ATCGTCGTCG,ATCGTCGTCGTCG,A
15224975.86
22
43284766
.
C
CGTCGTT
6257.93
22
43284767
rs550056924
G
GTCGTCA,A
6174.36
22
43284770
rs780857453
G
A
443.51
22
43284772
.
C
T,CGTCGTT
1392.09
22
43284778
rs570250283
C
T
63.47
22
43284779
rs372996693
GTCA
GTCGTCATCA,G
21354.89
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
22
43284761
rs569382186
ATCG
A
.
22
43284767
rs550056924
G
A
.
22
43284767
rs567392651
G
GTCGTCA
.
22
43284769
rs551030982
C
T
.
22
43284769
.
C
CGTCGTT
.
22
43284770
rs780857453
G
GTCGTCA,GTCT
.
22
43284778
rs570250283
C
T
.
22
43284779
rs372996693
G
GTCGTCA
.
22
43284781
rs3047381
C
CGTCGTC,CTCGTC
.