| General information of RDP00588 | |
|---|---|
| Gene Symbol: | STK3 |
| RefSeq ID: | NM_001256312 |
| Repeat coordinate: | chr8:98903487-98903556 (-) |
| Repeat size: | 23 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.003; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Ovarian clear cell carcinoma | NM_001256312 | 0.30 | 0 | 0 | UNIPROT |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
8
98903549
.
TCTTCTTC
T
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
8
98903486
rs767359012
AGTT
A
382.76
8
98903487
rs71572029
GTTCTTCTTCTTC
GCTCTTCTTCTTCTTC,GTTCTTC,GTTC,GTTCTTCTTC,GTTCTTCTTCTTCTTC,G
324105.30
8
98903488
rs28686933
T
C
318575.33
8
98903489
.
T
A
225891.37
8
98903490
.
C
G
225110.69
8
98903491
.
T
TTCC
129582
8
98903492
.
T
C
127944.05
8
98903494
.
T
C
49801.98
8
98903502
.
C
T
5507.97
8
98903506
.
T
C
224.48
8
98903510
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
3911.88
8
98903511
.
C
A
4402.46
8
98903513
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
12787.82
8
98903514
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTT
C
34718.87
8
98903516
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
75480.17
8
98903517
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTT
C
117616.19
8
98903518
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
90960.84
8
98903519
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
102982.84
8
98903520
.
C
T
112041.30
8
98903522
rs752499938
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
116139.68
8
98903523
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTT
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTT,C
136397.53
8
98903524
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
111715.71
8
98903525
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T,ACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC,TC
139923.88
8
98903526
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTT
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTT,C
132639.49
8
98903528
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T,TC
129099.02
8
98903529
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTT
C,TTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTT
173819.87
8
98903531
.
TCTTCTTCTTCTTCTTCTTCTTCTTCC
TC,T
185565.66
8
98903532
.
CTTCTTCTTCTTCTTCTTCTTCTTCCTTT
C,CT,TTTCTTCTTCTTCTTCTTCTTCTTCCTTT
196633.79
8
98903534
.
TCTTCTTCTTCTTCTTCTTCTTCC
TC,T
305227.67
8
98903535
.
CTTCTTCTTCTTCTTCTTCTTCCTTT
C,TTTCTTCTTCTTCTTCTTCTTCCTTT,CT,CTT
331490.97
8
98903536
.
TTCTTCTTCTTCTTCTTCTTCC
CTCTTCTTCTTCTTCTTCTTCC,T
311960.23
8
98903537
.
TCTTCTTCTTCTTCTTCTTCC
T,TC,TTTCTTCTTCTTCTTCTTCC
650602.08
8
98903538
rs867525176
CTTCTTCTTCTTCTTCTTCCTTT
TTTCTTCTTCTTCTTCTTCCTTT,CTT,CT,C
633839.24
8
98903539
rs574658690
TTCTTCTTCTTCTTCTTCC
CTCTTCTTCTTCTTCTTCC,GTCTTCTTCTTCTTCTTCC,T
660569.38
8
98903540
rs772138213
TCTTCTTCTTCTTCTTCC
TC,T,TTTCTTCTTCTTCTTCC
1116604.64
8
98903541
.
CTTCTTCTTCTTCTTCCTTTT
CTTT,CTT,TTTCTTCTTCTTCTTCCTTTT,CT,C
1133845.79
8
98903542
rs866390293
TTCTTCTTCTTCTTCC
CTCTTCTTCTTCTTCC,T,TTCTTCTTCTTCCTCTTCTTCTTCTTCC
1186411.02
8
98903543
rs766800289
TCTTCTTCTTCTTCC
T,TC,TTTCTTCTTCTTCC
1781886.22
8
98903544
rs866802107
CTTCTTCTTCTTCCTTTT
CTT,CT,TTTCTTCTTCTTCCTTTT,CTTT,C
1801976.01
8
98903545
rs868683480
TTCTTCTTCTTCC
TTCCTCTTCTTCTTCC,T,CTCTTCTTCTTCC
1854463.40
8
98903546
rs763558946
TCTTCTTCTTCC
TC,T,TTTCTTCTTCC
2631607.13
8
98903547
.
CTTCTTCTTCCTTTTT
CTTT,CTT,TTTCTTCTTCCTTTTT,C,CTTTT
2697186.01
8
98903548
rs755489644
TTCTTCTTCC
TTCCTCTTCTTCC,CTCTTCTTCC,T
2782558.37
8
98903549
rs546099279
TCTTCTTCC
T,TC,TTTCTTCC,ACTTCTTCC,TCTCCTTCTTCC
3646524.37
8
98903550
.
CTTCTTCCTTTTT
CTTTT,CTTT,TTTCTTCCTTTTT,C,CTT
3752610.41
8
98903551
.
TTCTTCC
TTCCTCTTCC,CTCTTCC,T
3872784.99
8
98903552
.
TCTTCC
T,TC,TTTCC
4382986.46
8
98903553
rs748654732
CTTCCTTT
CT,TTTCCTTT,C,CTT
4466080.81
8
98903554
rs376198598
TTCC
CTCC,T
4488655.58
8
98903555
rs796562006
TCC
T,TC
4976376.50
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
8
98903487
rs751273648
GTTC
G
.
8
98903487
.
GTTCTTC
G
.
8
98903487
rs71572029
GTTCTTCTTC
G
.
8
98903488
rs28686933
T
C
.
8
98903492
.
TC
AG
.
8
98903503
.
T
C
.
8
98903522
rs752499938
T
C
.
8
98903527
rs184013220
T
C
.
8
98903532
.
C
T
.
8
98903534
.
TCTTCTTCTTCTTCTTCTTCTTC
T
.
8
98903535
.
C
T
.
8
98903537
.
TCTTCTTCTTCTTCTTCTTC
T
.
8
98903538
.
C
T
.
8
98903539
rs574658690
T
C
.
8
98903540
rs760409432
TCTTCTTCTTCTTCTTC
T
.
8
98903540
rs772138213
TCTTCTTCTTCTTCTTCC
T
.
8
98903541
.
C
T
.
8
98903542
.
T
C
.
8
98903543
rs771544145
TCTTCTTCTTCTTC
TCTTCTTCTTCTT,T
.
8
98903543
rs777113063
TCTTCTTCTTCTTCC
TCTTCTTCTTCTTC,TCTTCTTCTTCTTT,T
.
8
98903544
.
C
T
.
8
98903544
.
CTTCTTCTTCTTCCTTT
CTTCTTCTTCTTCTTC,CTTCTTCTTCTTCTTT
.
8
98903546
rs746614223
TCTTCTTCTTC
TCTTCTTCTT,T
.
8
98903546
rs763558946
TCTTCTTCTTCC
T
.
8
98903547
.
C
T
.
8
98903547
.
CT
C
.
8
98903548
rs755489644
T
TTCC
.
8
98903549
rs540661561
TCTTCTTC
T
.
8
98903549
rs761406187
TCTTCTTCC
T
.
8
98903550
.
C
T
.
8
98903550
.
CTTCTTCCTTT
CTTCTTCTTC,CTTCTTCTTT
.
8
98903551
.
T
C
.
8
98903552
.
TCTTCC
TCTTCT
.
8
98903552
.
TCTTC
TCTT,TCTTCTT,T
.
8
98903553
.
C
T
.
8
98903553
.
CTTCC
CTTC,CTTCT,CTTCTTC
.
8
98903553
.
CTTCCT
CTTCT,CTTCTTCT
.
8
98903553
.
CTTCCTTT
CTTCTTC,CTTCTTCTTC,CTTCTTCTTT,CTTCTTT
.
8
98903553
rs748654732
CTTCCTTTTT
C
.
8
98903554
.
T
C
.
8
98903554
.
TTCC
TTCT
.
8
98903554
.
TTCCTTT
TTCTTC
.
8
98903554
rs376198598
TTCC
T,TTCT
.
8
98903555
.
TC
T
.
8
98903555
rs398008994
TC
TCTT,TCTTCTT,T,TT
.
8
98903555
rs796562006
TCC
TC,TCTTC,T
.
8
98903556
.
CCTTT
C,CTTC,CTTCTTC,T
.
8
98903556
rs200556218
C
CCC,CTTCTTCTT,CTTCTT,CTT
.
8
98903556
.
CCT
C
.
8
98903556
.
CCTTT
C
.