| General information of RDP00584 | |
|---|---|
| Gene Symbol: | LPA |
| RefSeq ID: | NM_005577 |
| Repeat coordinate: | chr6:160584170-160584239 (-) |
| Repeat size: | 23 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.002; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to OMIM: | ||
|---|---|---|
| Phenotype | OMIM_id | Location |
| {Coronary artery disease, susceptibility to} (1) | 152200 | 6q25-q26 |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Liver carcinoma | NM_005577 | 0.39 | 1 | 0 | CTD_human |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
160584170
rs749676172
TTTCTTCTTCTTCTTCTTCTTC
TTTCTTC,TTTCTTCTTC,TTTCTTCTTCTTCTTCTTC,T,TTTCTTCTTCTTC,TTTCTTCTTCTTCTTC
2172531.56
6
160584174
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCC
T
2136773.05
6
160584175
rs779527564
T
A
2133683.57
6
160584177
.
T
C
1795560.16
6
160584181
.
TC
T
1313001.87
6
160584183
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
958480.19
6
160584184
.
T
C
950674.32
6
160584185
.
C
A
957120.39
6
160584186
rs777297328
T
C
720315.65
6
160584193
.
T
G
277646.41
6
160584196
.
T
C
153339.46
6
160584201
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
6425.68
6
160584202
.
TC
T
6727.83
6
160584204
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T,TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
32821.30
6
160584207
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
48120.70
6
160584210
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
187343.30
6
160584212
.
CTT
C
186894.19
6
160584213
rs59803788
TTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
284612
6
160584215
.
CTTCTTCTTCTTCTTCTTCTTCT
C
283136.01
6
160584216
rs759085252
TTCTTCTTCTTCTTCTTCTTCTTCCTCC
TTCC,T
558277.94
6
160584218
.
CTT
C
558106.37
6
160584219
rs760317769
TTCTTCTTCTTCTTCTTCTTCCTCC
TTCC,T
765506.01
6
160584221
.
CTTCTTCTTCTTCTTCT
C,CCTTCTTCTTCTTCT,CTCT,CTCTTCTTCTTCT
767548.99
6
160584222
rs867123360
TTCTTCTTCTTCTTCTTCCTCC
TTCC,T
1166137.95
6
160584224
.
CTTCTTCTTCTTCT
CCTTCTTCTTCT,CTCT,C
1171805.82
6
160584225
.
TTCTTCTTCTTCTTCCTCC
TTCC,CTCTTCTTCTTCTTCCTCC,T
1376081.63
6
160584227
.
CTTCTTCTTCT
CTCT,CCTTCTTCT,C
1361147.81
6
160584228
rs746731587
TTCTTCTTCTTCCTCC
TTCC,CTCTTCTTCTTCCTCC,T
1437036.55
6
160584230
.
CTTCTTCT
CTCT,C,CCTTCT,CTCTTCT
1438809.77
6
160584231
rs56895741
TTCTTCTTCC
T,CTCTTCTTCC,TTCCTCTTCTTCC
1470333.77
6
160584232
.
T
TC
1463960.93
6
160584233
rs59801304
CTTCT
CTCT,CCT,C
1471160.64
6
160584234
rs372395444
TTCTTCCTCC
CTCTTCCTCC,TTCC,T,TCCTCTTCCTCC
1510857.74
6
160584235
.
T
TC
1417382.68
6
160584236
.
CT
C
1375293.93
6
160584237
rs201627765
TTCC
T,CTCC,TTCCTCCTCC,TCCTCC,TTCTTCCTCCTCC
2532035.93
6
160584238
.
TC
T
1094261.42
6
160584239
.
C
CTT,CCTCCTT,CTTCCTCCTT,CTTCTTCCTCCTT
1159135.74
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
160584170
rs56164694
TTTCTTCTTC
T
.
6
160584170
rs749676172
TTTCTTCTTCTTC
T
.
6
160584170
rs775275882
TTTCTTCTTCTTCTTC
T
.
6
160584170
.
TTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
.
6
160584175
rs779527564
T
C
.
6
160584182
rs541451390
C
T
.
6
160584186
.
TT
AA
.
6
160584186
rs777297328
T
TA
.
6
160584188
.
C
T
.
6
160584191
.
C
T
.
6
160584192
.
T
C
.
6
160584192
rs746620211
T
TA
.
6
160584197
.
C
T
.
6
160584198
.
T
C
.
6
160584199
.
T
A
.
6
160584201
.
T
C
.
6
160584203
.
CT
CC
.
6
160584204
.
T
C
.
6
160584204
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
.
6
160584207
.
T
C
.
6
160584207
.
TT
CT
.
6
160584210
.
T
C
.
6
160584210
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
.
6
160584211
.
TC
T
.
6
160584212
.
CT
CC,C
.
6
160584213
rs59803788
TTCTTCTTCTTCTTCTTCTTCTTCTTCC
T
.
6
160584214
.
TC
T
.
6
160584216
.
T
C
.
6
160584216
rs781348339
TTCTTCTTC
T
.
6
160584216
rs759085252
TTCTTCTTCTTCTTCTTCTTCTTCCTCC
T
.
6
160584219
.
T
C
.
6
160584219
rs760317769
TTCTTCTTCTTCTTCTTCTTCC
T
.
6
160584222
.
T
C
.
6
160584222
rs199872365
TTCTTCTTCTTCTTCTTCC
T
.
6
160584225
.
T
C
.
6
160584228
rs746731587
T
C
.
6
160584231
rs56895741
T
C
.
6
160584231
rs773454953
TTCTTCTTCC
T
.
6
160584233
rs59801304
CTT
C
.
6
160584234
rs372395444
T
C
.
6
160584234
.
TTCT
CTCC
.
6
160584234
rs60317645
TTCTTCC
T
.
6
160584237
rs201627765
T
C
.
6
160584237
.
TTCC
CTCC,T
.
6
160584237
.
T
TTCCTCC
.
6
160584237
.
TTCC
T
.