| General information of RDP00582 | |
|---|---|
| Gene Symbol: | ARPP21 |
| RefSeq ID: | NM_001267616 |
| Repeat coordinate: | chr3:35667950-35668031 (+) |
| Repeat size: | 27 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.002; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
3
35667945
rs2884793
AGAAAAGAAGAAGAAGAAG
GGAAAAGAAGAAGAAGAAG,A
8682.57
3
35667946
rs201596674
GAAAAGAAGAAGA
GAGAAGAAGA,GGAAGAAGA,G
12219.55
3
35667948
rs2884794
AAAGAAGAAGAAGAAGAAG
AAAGAAGAAG,AAAGAAGAAGAAGAAG,A,AAAGAAG,AAAGAAGAAGAAG,AAAG
1669983.44
3
35667951
rs867371894
GA
G
1595171.01
3
35667953
.
A
AGAAGAAGAG
1473113.54
3
35667954
.
GA
G
1451894.92
3
35667955
.
A
G,AAGG
1262578.24
3
35667956
.
A
AGAAGAG
1266036.89
3
35667957
.
GA
GAAAAACA,CA,G
1260677.57
3
35667958
rs551417040
A
G
994174.37
3
35667959
.
AGAAG
A,AGAGGAAG
973140.49
3
35667961
.
A
G
748605.84
3
35667964
.
A
G
526541.17
3
35667965
.
AG
A,TG,AGAGG
529021.63
3
35667966
rs769505291
GAA
GAAAAA,G
529815.82
3
35667968
rs867622462
A
AGAG
330772.83
3
35667969
.
GAAGAAGAAGAAGA
G
328934.41
3
35667970
.
A
G
180731.68
3
35667971
.
A
G
180256.30
3
35667972
.
G
A
178275.91
3
35667974
.
AG
A
105799.60
3
35667975
.
G
C
106457.55
3
35667976
.
AAGAAGAAG
A,GAGAAGAAG
82648.30
3
35667977
.
A
G
68320.21
3
35667978
.
G
C
69194.41
3
35667980
.
A
G
10132.04
3
35667983
.
A
G
5825.22
3
35667984
.
GA
G,CA
5469.34
3
35667986
.
AG
GG,A
1594.31
3
35667987
.
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGA
G
997.01
3
35667989
.
A
G
1390.92
3
35667992
.
A
G
939.76
3
35667995
.
A
G
1215.83
3
35667998
.
AG
A
801.67
3
35668000
.
AAGAAGAAGAAGAAG
A
753.70
3
35668001
.
A
G
1019.50
3
35668002
.
GA
G
2298.08
3
35668004
.
AGAAGAAGAAGAAG
AAAGAAGAAGAAG,A
1371.01
3
35668005
.
GAAGAAGAAGAA
G,GGAAGAAGAA,GAGAAGAAGAA
4763.53
3
35668006
.
AAGAAG
GAGAAG,A
4869.85
3
35668007
.
AG
A
4437.74
3
35668008
.
GAAGAAGAAGAAGAAGAAGA
GGAAGAAGAAGAAGAAGA,G,GGAAGAAGAAGA,GAGAAGAAGAAGAAGAAGA
6492.33
3
35668009
.
AAGAAG
GAGAAG,A,AAAG
6714.55
3
35668010
.
AG
A
8935.62
3
35668011
rs61249752
G
GAAGAAGAAGAAGAAA,A,GAAGAAGAAA,GAAGAAA,GAAGAAGAAGAAA
40605.32
3
35668012
rs371523713
AAG
GAG,A
11911.88
3
35668013
.
A
AG
10477.02
3
35668014
rs9843493
G
A,GAAGAAGAAGAAGAAA,GAAGAAGAAGAAGAAGAAGAAA,GAAGAAGAAA,GAAGAAGAAGAAGAAGAAA,GAAGAAGAAGAAA
97674.46
3
35668015
rs868508885
A
G,AGAAGG,AAGGAGAAGG
14975.82
3
35668016
.
A
G
9475.94
3
35668017
rs181169586
GAA
GAAGAAAAA,AAA,G,GAAAAA,GA
50369.64
3
35668018
rs866379075
AAGAAGAAGAAGAAGG
AAGGAGAAGAAGAAGAAGG,A
19488.92
3
35668019
.
A
AG
10530.93
3
35668020
.
GAAGAAGAAGAAGGAGA
GGAAGAAGAAGGAGA,G,GAGAAGGAGA,GGGAGA,GAGAAGAAGAAGGAGA
49810.82
3
35668021
rs368830013
AAGAAGAAGAAGG
GAGAAGAAGAAGG,AAGGAGAAGGAGAAGGAGAAGAAGAAGG,A,AGAAGGAGAAGGAGAAGGAGAAGAAGAAGG
56972.62
3
35668023
.
GAAGAAGAAGGAGA
GGAAGAAGGAGA,G,GAGAAGGAGA,GAGAAGAAGGAGA,GGGAGA
87962.90
3
35668024
rs868647489
AAGAAGAAGG
GAGAAGAAGG,A
90215.47
3
35668025
rs554223153
A
AGAG,AG,G
75342.08
3
35668026
.
GAAGAAGGAGA
GAGAAGGAGA,GGAAGGAGA,G,AAAGAAGGAGA,GGGAGA
98801.55
3
35668027
rs185523855
A
AAGG,AAGAAGG,G,AAGAAGAAGAAGG,AAGAAGAAGG
417221.89
3
35668029
.
GAAGGAGA
GGGAGA,G,GAGGAGA
69993.89
3
35668030
.
A
G,AAGG
71771.62
3
35668031
rs188081193
A
G,AGAAGAC
78105.93
3
35667960
.
GAAGAAGAAGAA
GAGAAGAAGAA,G,GGAAGAA,GAAGAAGAACAAGAAGAAGAA
979007.35
3
35667962
rs73825897
AGAAGAAG
AAAGAAG,A,GGAAGAAG
743314.86
3
35667963
rs867178415
GAAGAAGAAGAAGAAGAAGA
GAGA,GAGAAGA,GAGAAGAAGA,G,GAGAAGAAGAAGA
810255.35
3
35667967
.
AAGAAGAAGAAGAAG
GAGAAGAAGAAGAAG,A,AAAGAAG,AAAGAAGAAG
333624.89
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
3
35667948
rs4025938
AAAGAAGAAG
A
.
3
35667951
rs3087184
G
GAA
.
3
35667958
rs551417040
A
G
.
3
35667960
.
G
A
.
3
35667962
rs73825897
A
G
.
3
35667962
rs770468525
AG
A
.
3
35667963
.
GA
G
.
3
35667965
.
AG
A
.
3
35667966
rs760653288
G
GA
.
3
35667966
rs769505291
GA
G,GG
.
3
35667973
.
A
G
.
3
35667976
.
A
G
.
3
35667979
.
A
G
.
3
35667982
.
A
G
.
3
35667988
.
A
G
.
3
35667991
.
A
G
.
3
35668000
.
A
G
.
3
35668002
.
G
A
.
3
35668003
rs530626210
A
G
.
3
35668011
rs61249752
G
A
.
3
35668012
rs371523713
A
G
.
3
35668014
rs9843493
G
A
.
3
35668017
rs181169586
G
A
.
3
35668018
.
A
G
.
3
35668019
.
A
G
.
3
35668021
rs368830013
A
G
.
3
35668022
.
A
G
.
3
35668025
rs554223153
A
G
.
3
35668026
.
G
A
.
3
35668027
rs185523855
A
G
.
3
35668030
.
A
G
.
3
35668031
rs188081193
A
G
.
3
35667968
rs573715238
AG
A
.