| General information of RDP00575 | |
|---|---|
| Gene Symbol: | CDH22 |
| RefSeq ID: | NM_021248 |
| Repeat coordinate: | chr20:46226232-46226292 (-) |
| Repeat size: | 20 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.002; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Colorectal Neoplasms | NM_021248 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
20
46226231
rs758169589
CCTTCTTCTT
CCTTCTT,CCTTCTTCTTCTT,C,CCTTCTTCTTCTTCTTCTT,CCTT,CCTTCTTCTTCTTCTTCTTCTTCTT
294250.58
20
46226233
.
T
TTCTTCTTCC
228806.24
20
46226234
.
T
C
227203.25
20
46226236
.
T
TTCTTCC
187065.57
20
46226237
.
T
G
163359.79
20
46226239
rs144689947
T
TTCTTCTTCTTCTTCTTCTTCTTCC
117829.50
20
46226241
.
CT
C
68046.41
20
46226242
rs575883209
T
C,TTCTTCTTCTTCTTCTTCTTCC
35146.61
20
46226243
rs868546549
T
TCTTCTC
16893.96
20
46226244
rs150175798
CTTCTT
CTTCTTCTTCTTCTTGTTCTT,C
35710.52
20
46226245
.
T
TTCTTCTTCTTCTTCTTCC
31363.70
20
46226248
rs543307290
T
TTCTTCTTCTTCTTCC
77420.90
20
46226249
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
40659.81
20
46226250
.
C
T
65016.30
20
46226251
rs562054376
T
TTCTTCTTCTTCC,TTCTTCTTCTTCTTCTTCC,TTCTTCTTCTTCTTCC
121375.91
20
46226252
rs867879567
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,T
52159.21
20
46226253
.
C
T
59013.11
20
46226254
.
T
TTCTTCTTCC
45000.16
20
46226255
rs60663270
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,T,TTTC
98217.65
20
46226256
.
C
T
90966.27
20
46226257
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T,TTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
72407.03
20
46226258
rs60256255
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTC,TTTCTTC,TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,T,TTTCTTCTTC
3379745.92
20
46226259
rs6074070
C
T
3686998.73
20
46226260
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,T
644539.24
20
46226261
rs780069136
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,TTTC,TTTCTTC,T,TTTCTTCTTC
4030729.35
20
46226262
rs867306972
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTT
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTT,C,CTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTT
4261744.12
20
46226263
rs867739548
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTC,T
1084850.48
20
46226264
rs772123402
TCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTC,TTTCTTCTTC,T,TTTCTTC,TTTCTTCTTCTTCTTCTTCTTCTTCTTC
10157238.92
20
46226265
rs763123833
C
T
9635721.44
20
46226266
rs58091134
TTCTTCTTCTTCTTCTTCTTCTTCTTC
T
8766256.11
20
46226267
rs749357058
TCTTCTTCTTCTTCTTCTTCTTCTTC
TTTCTTC,TTTC,TTTCTTCTTCTTCTTCTTCTTCTTC,T,TTTCTTCTTCTTC
9481487.27
20
46226268
rs773487791
CTTCTTCTTCTTCTTCTTCTTCTTCT
TTTCTTCTTCTTCTTCTTCTTCTTCT,C
9889757.29
20
46226269
.
TTCTTCTTCTTCTTCTTCTTCTTC
T
9079086.48
20
46226270
.
TCTTCTTCTTCTTCTTCTTCTTC
TTTCTTCTTCTTCTTCTTCTTC,TTTC,T,TTTCTTC
9235677.79
20
46226271
rs746924839
C
T,G
9773396.60
20
46226272
.
TTCTTCTTCTTCTTCTTCTTC
T
9170681.12
20
46226273
.
TCTTCTTCTTCTTCTTCTTC
T,TTTC,TTTCTTC,TTTCTTCTTCTTCTTCTTC
9200683.77
20
46226274
rs761837670
C
T
9499722.57
20
46226275
.
TTCTTCTTCTTCTTCTTC
T
9195240.10
20
46226276
.
TCTTCTTCTTCTTCTTC
TTTCTTC,TTTCTTCTTCTTCTTC,T,TTTC
9232034.44
20
46226277
.
C
T,G
9349267.97
20
46226279
.
TCTTCTTCTTCTTC
T,TTTC
9204774.93
20
46226280
.
C
T
9185985.18
20
46226281
.
TTCTTCTTCTTC
T
9188260.99
20
46226282
.
TCTTCTTCTTC
TTTCTTCTTC,TTTC,T
9195102.43
20
46226283
.
CTTCTTCTTCTT
TTTCTTCTTCTT,C
9188576.11
20
46226284
.
TTCTTCTTC
T
9144928.81
20
46226285
.
TCTTCTTC
T,TTTC,TTTCTTC
9159201.94
20
46226286
.
C
T
9162372.73
20
46226287
.
TTCTTC
T
8870133.19
20
46226288
rs59821164
TCTTC
TTTC,T
8869297.10
20
46226289
rs796346886
CTTCTT
TTTCTT,CTTTTCTT,C
9242254.46
20
46226292
rs67118771
CTT
TTT,CTTTTTTT,CTTTTTT,C
10775121.66
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
20
46226231
.
CCTT
C
.
20
46226231
rs752305941
CCTTCTTCTTCTTCTTCTTCTTCTTCTT
C
.
20
46226231
rs758169589
CCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
C
.
20
46226235
rs201768065
C
T
.
20
46226238
rs149648422
C
T
.
20
46226239
rs144689947
T
C
.
20
46226242
rs575883209
T
C
.
20
46226244
rs150175798
C
T
.
20
46226248
rs543307290
T
C
.
20
46226250
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
CTTCTTCTTCTTT
.
20
46226251
rs562054376
T
C
.
20
46226255
rs60663270
TC
T,TT
.
20
46226256
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
CTTTTTT
.
20
46226257
.
TTC
TT
.
20
46226257
.
TTCTTCTTCTTCTT
TTCTTCTTTTTT
.
20
46226258
.
TC
T
.
20
46226258
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TCTTCTTTTT,TCTTCTTTTTT,TTT,TTTT,TTTTT,TTTTTT
.
20
46226258
rs6074070
TC
T,TT
.
20
46226258
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TCTTCTT,T
.
20
46226259
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
CTTCTTTTT,TTT,TTTT
.
20
46226261
.
TC
T
.
20
46226261
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T,TCTT
.
20
46226261
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTT,TTTT
.
20
46226261
rs780069136
TC
T,TT
.
20
46226261
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TCTT,T
.
20
46226261
rs544738589
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TCTTTTT,T,TT,TTT,TTTT,TTTTT
.
20
46226263
.
T
C
.
20
46226263
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTTTT
.
20
46226264
.
TC
T
.
20
46226264
.
TCTTCTTCTTCTTCTTCTTCTTCTTC
T
.
20
46226264
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T,TTTT
.
20
46226264
rs763123833
TC
T,TT
.
20
46226264
rs772123402
TCTTCTTCTTCTTCTTCTTCTTCTTC
T
.
20
46226264
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T,TTT,TTTT,TTTTT
.
20
46226265
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCT
CTTTTTT
.
20
46226266
rs58091134
TTCTTCTTCTTCTTCTTCTTC
T
.
20
46226267
.
TC
T
.
20
46226267
rs773487791
TC
T,TT
.
20
46226267
.
TCTTCTTCTTCTTCTTCTTCTTC
T
.
20
46226267
.
TCTTCTTCTTCTTCTTCTTCTTCTTC
T,TTTT
.
20
46226270
.
TCTTCTTCTTCTTCTTCTTCTTC
T
.
20
46226270
.
TCTTCTTCTTCTTCTTCTTCTTC
T
.
20
46226271
rs746924839
C
T
.
20
46226274
rs761837670
C
T
.
20
46226277
.
C
T
.
20
46226280
.
C
T
.
20
46226283
.
C
T
.
20
46226285
.
TCTTC
TTT
.
20
46226286
.
C
T
.
20
46226286
.
CTTC
CTT,CTTT
.
20
46226286
.
CTTCTTC
CTTTTT,CTTTTTT
.
20
46226288
.
TC
T,TT
.
20
46226288
rs59821164
TC
T,TT
.
20
46226289
.
CTTC
TTTT
.
20
46226289
.
C
CTT,CT
.
20
46226289
rs796346886
CTTCTT
C
.
20
46226291
.
TC
TTTT
.
20
46226291
rs67118771
TC
T,TT
.