| General information of RDP00571 | |
|---|---|
| Gene Symbol: | CIB4 |
| RefSeq ID: | NM_001029881 |
| Repeat coordinate: | chr2:26588978-26589059 (-) |
| Repeat size: | 27 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.001; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
26588979
.
T
TTCTTCTTCTTCTTCTTCTTCTTCC,TTCTTCTTCTTCTCCTTCTTCTTCTTCC,TTCC
113134.23
2
26588980
.
T
C,TCTTCTTCTTCTC
301220.54
2
26588981
rs186620066
C
T,CT,CTTCTTCTTT,CTTT,A
362014.43
2
26588982
.
TTCTTCTTCTTC
TTTCTTCTTC,TTTC,TTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTC,T,TTTCTTC
1008241.81
2
26588983
.
T
TCTTCTTCTC
1007627.29
2
26588984
.
C
A
1021743.16
2
26588985
.
T
TTCTTCTTCTTCTTCTTCC
47009.89
2
26588986
.
T
TCTTCTC,C
53344.70
2
26588987
.
C
CT,CTTT,A
487498.77
2
26588988
rs139743375
TTCTTCTTCTTCTTCTTC
TTTCTTCTTCTTCTTC,TTTCTTCTTC,TTTCTTCTTCTTC,TTTCTTC,TTTC,T
2182272.33
2
26588989
.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCC
CCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCC,TCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCC,TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCC,T
2117987.13
2
26588990
rs866912582
CT
TT,C,AT
2110455.96
2
26588991
.
TTC
TTCTTCTTCTTCCTC,TTCTTCTTCTTCCTCTTCCTC,T
1270498.37
2
26588992
rs113544490
T
C
1285714.50
2
26588993
.
CTT
C
1235792.86
2
26588994
.
TTCTTCTTCTTCTTCTTC
TTCTTCTTCCTCTTCTTCTTCTTCTTC,TTTCTTCTTCTTCTTC,T,TTTCTTCTTCTTC
698968.21
2
26588995
rs543893978
T
C
684156.65
2
26588996
.
C
A
690655.45
2
26588997
.
T
TTCC,TTCTTCC
285400.32
2
26588998
.
T
C
278536.13
2
26588999
.
CTT
TTT,C
281688.82
2
26589000
.
T
C,TTCC
188228.67
2
26589001
.
T
C,TC
125227.74
2
26589002
.
CTT
C,TTT,CT,ATT
292750.42
2
26589003
rs376402518
T
C,TTCC,TCTTCC
1082580.90
2
26589004
.
T
C
165779.25
2
26589005
.
CTT
TTT,CT,C
186371.85
2
26589006
rs867772988
T
C,TTCC
167762.40
2
26589008
.
CT
C,TT,AT
7617.91
2
26589009
.
T
C
239784.70
2
26589010
.
T
C
2179.96
2
26589011
.
C
A
2325.39
2
26589012
rs868622960
T
C
166549.51
2
26589013
.
T
C
2004.19
2
26589014
.
C
A
2254.75
2
26589015
rs763222022
T
C
287059.73
2
26589016
.
T
C
854.51
2
26589017
.
C
T
1485.30
2
26589018
rs369496553
T
C
123449.01
2
26589021
rs867657426
T
C,TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCC
51561.59
2
26589022
.
T
G
909.79
2
26589024
.
T
C
14009.05
2
26589027
.
T
C
48926.19
2
26589030
rs868351107
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCC
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCC,T
12834.29
2
26589033
rs867160709
TTCTTC
CTCTTC,T
5283.90
2
26589034
.
T
TC
2280.68
2
26589036
rs868125625
T
C,TTCCTCTTCC,TTCTTCCTCTTCC,TTCC,TTCTTCTTCTTCTTCCTCTTCC
15788.17
2
26589038
.
CTT
C
2102.92
2
26589039
rs868505265
T
C,TTCCTCTTCC
6415.41
2
26589040
.
T
TC
3447.59
2
26589041
.
CTT
C
2025.22
2
26589042
rs867017623
T
TTCTTCTTCCTCTTCC,C,TTCTTCCTCTTCC,TCTTCC,TTCCTCTTCC
30936.42
2
26589044
.
CTTCTTCTTCT
CCTTCTTCT,C
7171.89
2
26589045
rs13012818
TTCTTCTTCTTCTTCCTCTTCCTCTTCC
TTCTTCCTCTTCC,CTCTTCTTCTTCTTCCTCTTCCTCTTCC,T,TTCCTCTTCCTCTTCTTCTTCTTCCTCTTCCTCTTCC,TTCTTCTTCTTCTTCCTCTTCTTCTTCTTCCTCTTCCTCTTCC
18504.92
2
26589047
.
CTTCTTCT
C,CCTTCT,CTCTTCT
9420.36
2
26589048
rs866344910
TTCTTCTTCTTCCTCTTCCTCTTCC
TTCTTCC,TTCCTCTTCTTCTTCCTCTTCCTCTTCC,CTCTTCTTCTTCCTCTTCCTCTTCC,T,TTCTTCCTCTTCC
36420.95
2
26589049
.
T
TC,C
15006.07
2
26589050
.
CTTCT
C,CCT
20398.92
2
26589051
rs867352843
TTCTTCTTCCTCTTCCTCTTCC
TTCTTCCTCTTCC,CTCTTCTTCCTCTTCCTCTTCC,TTCTTCC,T
123182.42
2
26589053
.
CT
C
106595.11
2
26589054
rs12475672
TTCTTCCTCTTCCTCTTCC
CTCTTCCTCTTCCTCTTCC,T,TTCTTCCTCTTCC,TTCTTCC,TTCCTCTTCCTCTTCCTCTTCC
177361.66
2
26589056
.
CTT
C
116736.21
2
26589057
.
TTCCTCTTCCTCTTCC
CTCCTCTTCCTCTTCC,TTCTTCCTCTTCC,TTCTTCC,T,TTCCTCCTCTTCCTCTTCC
526541.04
2
26589058
.
TC
T
479802.22
2
26589059
rs769408217
CCTCTTCCTCTTCCTCTTCTTCT
CTTCTCTTCCTCTTCCTCTTCTTCT,CTCT,CTCTTCT,C
568086.11
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
26588981
rs186620066
C
A
.
2
26588981
.
C
CT
.
2
26588987
.
C
CT
.
2
26588988
.
TTC
T
.
2
26588988
.
TTCTTCTTC
T
.
2
26588988
.
TTCTTCTTCTTC
T
.
2
26588988
rs139743375
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
.
2
26588990
.
C
T
.
2
26588990
.
C
CT
.
2
26588991
.
TTC
T
.
2
26588992
rs113544490
T
C
.
2
26588993
.
C
CT
.
2
26588995
rs543893978
T
C
.
2
26588996
.
C
CT
.
2
26588997
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
.
2
26588999
.
C
CT
.
2
26589000
.
T
C
.
2
26589003
rs376402518
T
C
.
2
26589006
.
T
C
.
2
26589009
.
T
C
.
2
26589009
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
TTCTTCTTCTTCTCCTTCCCCTTCCCCTTCCC
.
2
26589012
.
T
C
.
2
26589013
.
T
C
.
2
26589014
.
CTTCTT
CTTCCC
.
2
26589014
.
CTTCTTCTTCTTC
CTTCTTCTCCTTC
.
2
26589015
rs763222022
T
C
.
2
26589018
rs369496553
T
C
.
2
26589019
.
T
C
.
2
26589019
.
TCTT
TCTC
.
2
26589021
.
T
C
.
2
26589022
.
T
C
.
2
26589024
.
T
C
.
2
26589024
.
TT
CC
.
2
26589024
.
TTCTTCTT
CCCTTCTC
.
2
26589025
.
TCTT
TCCC
.
2
26589027
.
TT
CC
.
2
26589028
.
T
C
.
2
26589030
.
T
C
.
2
26589030
.
TT
CC
.
2
26589031
.
T
C
.
2
26589031
.
TCT
CCT
.
2
26589033
.
T
C
.
2
26589033
.
TT
CC
.
2
26589034
.
T
C
.
2
26589035
.
C
CT
.
2
26589036
.
T
C
.
2
26589036
.
TT
CC
.
2
26589037
.
T
C
.
2
26589037
.
TCTTCT
TCCCCT
.
2
26589039
.
T
C
.
2
26589039
.
TT
CC
.
2
26589042
.
T
C
.
2
26589042
.
TT
CC
.
2
26589043
.
T
C
.
2
26589045
rs13012818
T
C
.
2
26589045
.
TT
CC
.
2
26589046
.
T
C
.
2
26589048
.
T
C
.
2
26589048
.
TT
CC,CT
.
2
26589048
rs758691386
TTCTTCTTCTTCCTCTTCCTCTTCC
T
.
2
26589049
.
T
C
.
2
26589051
.
T
C
.
2
26589052
.
T
C
.
2
26589052
.
TCTT
TCTC
.
2
26589054
rs12475672
T
C
.
2
26589054
.
TT
CC
.
2
26589055
.
T
C
.
2
26589057
.
T
C
.
2
26589059
rs769408217
C
CTT
.