| General information of RDP00569 | |
|---|---|
| Gene Symbol: | LRP1B |
| RefSeq ID: | NM_018557 |
| Repeat coordinate: | chr2:141544298-141544382 (-) |
| Repeat size: | 28 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.000; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Papillary Renal Cell Carcinoma | NM_018557 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
141544299
.
T
C,TTCTTCTTCGTCG
124315.68
2
141544300
.
T
TCTA
500410.92
2
141544302
.
T
TTCTTCGTCG,TTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
85746.86
2
141544303
rs55667124
T
A
174595.36
2
141544305
.
T
TTCGTCG,TTCTTCTTCTTCC,TTCTTCTTCTTCTTCTTCTTCTTCTTC,TTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCC
6889.32
2
141544308
rs188902662
T
G,TCG
21145
2
141544311
rs192579267
T
G,TTCTTCC,TTCTTCTTCTTCTTCTTC
14198.93
2
141544314
.
T
G,TTCC,TTCTTCTTCTTCTTCTTC
2133.17
2
141544315
rs747968477
TC
T
238.51
2
141544320
.
T
TTCTTCTTCTTTTCTTCTTCTTCTTCTTCTTCC
4520.12
2
141544321
.
TC
T
251.88
2
141544324
.
TCTTCTTCTTCTTC
TTTC,TTTCTTCTTCTTC,T,TTTCTTC
5290.78
2
141544327
rs370453049
TCTTCTTCTTC
TTTCTTCTTC,TTTC,T,TTTCTTC
61180.08
2
141544329
.
T
TTCC,TTTTCTTCC,TTCTTCTTCTTCTTCTTCTTCTTC
30341.16
2
141544330
rs777999971
TCTTCTTC
TTTCTTC,TTTC,T
814431.19
2
141544331
.
C
CTTCTTCTTCTTCTT,CTTCTT,CTTCTTCTT,CTT,CTTCTTCTTCTTCTTCTT
889853.54
2
141544332
.
T
C,TTCC
130025.36
2
141544333
rs149353236
TCTTCTTC
TTTC,TTTCTTC,T,GCTTCTTC
620357.64
2
141544334
rs200128756
C
CTT,CTTCCTCTTCTTCTTCTTCTTCTTCTT,CTTCTTCTTCTT,CTTCTTCTTCTTCTTCTTCTTCTT,CTTCTTCTTCTTCTTCTT
684684.39
2
141544335
rs866887396
T
TTCC,C,TTCTTCTTCTTCTTCTTCTTCTTCTTCTCC
262830.78
2
141544336
rs71348768
TCTTCTTCTTC
TTTCTTCTTC,TTTC,T,TTTCTTC
415886.68
2
141544337
rs202029290
C
CTT,CTTCTTCTTCTTCTT,CTTCTTCTT,CTTCTTCTTCTTCTTCTTCTT,CCTCTTCTTCTTCTTCTTCTTCTT
490331.81
2
141544338
rs529137568
T
TTCC,C,TTCTTCTTCTTCTTCTTC,TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCC,TTCTTCTTCTTCTTC
55707.78
2
141544339
rs374429980
TC
T
111193.18
2
141544340
.
C
CTTCTTCTTCTTCTTCTTCTT,CTTCTTCTTCTTCTTCTT,CTT,CTTCTTCTTCTT,CTTCTTCTT
168782.16
2
141544341
rs868811238
T
C,TTCTTC
55701.77
2
141544342
rs767717559
TC
T,TCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTCC
33547.04
2
141544343
.
C
CTT,CTTCTT,CTTCTTCTTCTTCTTCTTCTT,CTTCTTCTT,CTTCTTCTTCTT
133365.55
2
141544344
.
T
C,TTC,TTCTTC
8958.06
2
141544345
.
TC
T
65750.31
2
141544346
.
C
CTT,CTTCTTCTTCTT,CTTCTTCTTCTTCTTCTTCTT,CTTCTTCTT,CTTCTT
134110.91
2
141544347
.
T
C
3492.24
2
141544348
.
TC
T
47629.09
2
141544349
.
CT
CTTT,CTTCTTT,C,CTTCTTCTTT
79379.48
2
141544350
.
T
TTC,TTCTTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCC,TTCTTTTCTTCTTCTTCTTCTTCTTCTTCC
2421.12
2
141544351
.
TC
T
41034.54
2
141544352
.
CT
CTTT,CTTCTTCTTCTTCTTT,CTTCTTCTTT,C
66079.26
2
141544353
rs549012980
T
TTC,TTCTTTTCTTCTTCTTCTTCTTCTTCTTCC,TTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCC
1804.97
2
141544354
rs778091835
TC
T
25591.50
2
141544355
.
CT
CTTT,CTTCTTT,C
36039.13
2
141544356
.
T
TTCTTC,TTCTTTTCTTCTTCTTCTTCTTCTTCTTCC
1111.79
2
141544357
.
TC
T
19334.11
2
141544358
.
C
CTT,CTTCTT,CTTCTTCTTCTT
42320.98
2
141544359
.
T
TTTTCTTCTTCTTCTTCTTCTTCTTCC
1848.69
2
141544360
.
TC
T
26636.75
2
141544361
.
C
CTT,T,CTTCTT
38771.40
2
141544362
.
T
C
1487.43
2
141544363
rs756442018
TC
T
12836.87
2
141544364
.
C
T,CTT
22170.49
2
141544365
rs865940444
T
TCC
1598.32
2
141544366
rs756387683
TCTTCTTCTTCTTCTTCTCCTC
TTTCTTCTTCTTCTTCTCCTC,T
6790.76
2
141544367
.
C
CTT,T
11026.15
2
141544368
.
T
C,TTCTTCTTCTTCTTCC,TTCTTCTTCTTCTTCTTCTTCTTCTTCC,TTCTTCTTCTTCTTCTTCTTCTTCC
4834.75
2
141544369
.
TCTTCTTCTTCTTCTCCTC
TTTCTTCTTCTTCTCCTC,T
5222.11
2
141544370
.
C
CTT,T
6881.14
2
141544371
.
T
TCC
2540.04
2
141544372
rs367697709
TCTTCTTCTTCTCCTC
TTTCTTCTTCTCCTC,CCTTCTTCTTCTCCTC,T
5135.25
2
141544373
.
C
CTT,T
4388.12
2
141544374
rs867816468
T
TCC
4089.78
2
141544375
.
TCTTCTTCTCCTC
CCTTCTTCTCCTC,T
19591.51
2
141544376
.
C
CTT
5832.64
2
141544377
.
T
TCC,C
5207.04
2
141544378
rs868435291
TCTTCTCCTC
CCTTCTCCTC,T,TCTC,TCTTCTCCTTCTCCTC,TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTC
346354.55
2
141544380
.
T
C
9342.72
2
141544382
.
C
CT,T,CTTCTTCTTCTTCTTCT,CTTCT
805669.07
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
141544303
rs55667124
T
A
.
2
141544308
rs188902662
T
G
.
2
141544308
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTT
.
2
141544311
rs192579267
T
G
.
2
141544312
rs754430399
TC
T
.
2
141544315
rs747968477
TC
T
.
2
141544316
rs745821589
C
CTTCTTCTTCTTCTTCTTCTTCTTCTT
.
2
141544318
.
TC
T
.
2
141544320
.
TT
ATC
.
2
141544321
.
TC
T
.
2
141544321
.
TC
T
.
2
141544322
.
C
CTT
.
2
141544322
.
CT
C
.
2
141544324
.
TC
T
.
2
141544326
.
T
C
.
2
141544326
.
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
TTCTTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTTCTTCTT
.
2
141544327
rs370453049
TC
T,TT
.
2
141544328
.
C
CTT
.
2
141544330
rs777999971
T
TC
.
2
141544330
rs150697929
TC
TCTT,T
.
2
141544330
rs771914029
TCTTCTTC
T
.
2
141544331
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
CTTCTTCTTCTTCTTTTCTTCTTCTTCTTCT
.
2
141544331
.
C
CTT
.
2
141544333
rs149353236
TC
T,TT
.
2
141544334
rs200128756
C
CTT
.
2
141544335
.
T
C
.
2
141544336
rs71348768
T
A
.
2
141544336
.
TC
T
.
2
141544337
rs202029290
C
CTT
.
2
141544338
rs529137568
T
C
.
2
141544339
.
T
C
.
2
141544339
rs374429980
TC
T
.
2
141544340
.
CTTCTTC
CTTCTT
.
2
141544340
.
CTTCTTCT
CTTCTTT
.
2
141544341
.
T
C
.
2
141544342
.
T
C
.
2
141544342
rs767717559
TC
T
.
2
141544343
.
CTTCTTC
CTTTTC
.
2
141544344
.
TTC
TT
.
2
141544345
.
TC
T
.
2
141544345
.
TCT
TT
.
2
141544345
.
TC
T
.
2
141544346
.
CT
T
.
2
141544347
.
T
C
.
2
141544348
.
TC
T
.
2
141544350
.
T
C
.
2
141544351
.
TC
T,TT
.
2
141544353
rs549012980
T
C
.
2
141544354
rs778091835
TC
T
.
2
141544355
.
CT
C
.
2
141544357
.
T
C
.
2
141544357
.
TC
T
.
2
141544359
.
T
C
.
2
141544360
.
TC
T
.
2
141544363
.
T
C
.
2
141544363
rs756442018
T
TC
.
2
141544363
.
TC
T
.
2
141544366
.
T
C
.
2
141544366
rs756387683
TC
T
.
2
141544369
.
T
C
.
2
141544369
.
TC
T
.
2
141544371
.
T
C
.
2
141544372
.
T
C
.
2
141544372
rs367697709
TC
T,TT
.
2
141544375
.
T
C
.
2
141544375
.
TCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
TCTTCTTCTTCTCCTCCTCCTCCTCCTCCTTCTCCTCCTT
.
2
141544375
.
TC
T
.
2
141544378
.
T
C
.
2
141544378
.
TCTTCTC
TCTTCTT
.
2
141544381
rs62169784
T
C
.
2
141544382
.
CTC
CTT
.