| General information of RDP00562 | |
|---|---|
| Gene Symbol: | LRRC4C |
| RefSeq ID: | NM_001258419 |
| Repeat coordinate: | chr11:40630332-40630389 (-) |
| Repeat size: | 19 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.000; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
11
40630330
rs796491784
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT,CTCT,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT,CTCTTCTTCTTCTTCTTCTTCTTCT,CTCTTCTTCTTCTTCTTCTTCTTCTTCT
8165393.15
11
40630333
rs866274245
T
A
7161671.02
11
40630334
.
TC
T
6921707.71
11
40630336
rs866803923
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
6906901.73
11
40630338
.
CT
C
6358085.41
11
40630340
.
T
C
5879191.92
11
40630341
.
CTT
C
5892567.25
11
40630344
.
C
CTTCTTCTTCTTCTTCTTT
5628363.81
11
40630346
.
TC
TCTCC,T
5529792.47
11
40630348
rs571905729
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
5518774.34
11
40630349
.
TC
T
5453966.62
11
40630351
rs548133339
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
T
5454781.32
11
40630352
.
TC
T
5385835.52
11
40630355
rs140541146
TC
T
5321142.95
11
40630358
rs757380770
TC
T
5132016.22
11
40630359
.
C
T
5130812.10
11
40630360
rs11035975
T
C
5112796.54
11
40630361
rs377415416
TC
T
3671085.77
11
40630363
rs372415222
T
C
3652326.69
11
40630364
.
TC
T
505460.97
11
40630365
.
C
CTTCTTCTTCTTT
480267.80
11
40630366
rs375698568
T
C
500501.79
11
40630367
.
T
G
79856.78
11
40630369
rs368769006
T
C
79348.56
11
40630370
.
TC
T
3766.86
11
40630372
.
T
C
13284.94
11
40630373
.
TC
T
1753.09
11
40630375
rs372121378
T
C
2337.57
11
40630376
.
TC
T
1202.55
11
40630378
.
T
C
4393.57
11
40630382
.
TC
T
582.26
11
40630384
.
T
C
237.04
11
40630385
.
TC
T
258.58
11
40630389
.
CTT
C
11130.70
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
11
40630330
rs778793891
CTCT
C
.
11
40630330
rs200043868
CTCTTCT
C
.
11
40630330
.
CTCTTCTTCTTCTTCTTCT
C
.
11
40630330
.
CTCTTCTTCTTCTTCTTCTTCT
C
.
11
40630330
.
CTCTTCTTCTTCTTCTTCTTCTTCT
C
.
11
40630330
.
CTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
.
11
40630330
rs202025751
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTT
.
11
40630330
rs766688363
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCT,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTT
.
11
40630330
.
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C,CTCT,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCT
.
11
40630330
.
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
C
.
11
40630333
.
T
C
.
11
40630335
rs144534485
C
T
.
11
40630336
.
T
C
.
11
40630339
.
T
C
.
11
40630342
.
T
C
.
11
40630344
.
C
G
.
11
40630345
.
T
C
.
11
40630348
rs571905729
T
C
.
11
40630351
rs548133339
T
C
.
11
40630355
rs140541146
TC
T
.
11
40630357
rs541123469
T
C
.
11
40630358
rs757380770
T
TC
.
11
40630358
rs140726664
TC
T,TT
.
11
40630360
rs11035975
T
C
.
11
40630361
.
T
TC
.
11
40630361
rs377415416
TC
T,TT
.
11
40630362
.
CTTC
CCTC
.
11
40630363
rs372415222
T
C
.
11
40630364
.
TC
T
.
11
40630366
rs375698568
T
C
.
11
40630367
.
T
A
.
11
40630369
rs368769006
T
C
.
11
40630371
.
C
A
.
11
40630372
.
T
C
.
11
40630373
.
TC
TA,T
.
11
40630375
rs372121378
T
C
.
11
40630376
rs375485834
TC
TA,T
.
11
40630377
.
C
CTT
.
11
40630378
.
T
C
.
11
40630380
.
C
A
.
11
40630381
rs368808960
T
C
.
11
40630384
.
T
C
.
11
40630386
.
C
T
.
11
40630388
.
T
C
.
11
40630389
.
C
G,T
.