| General information of RDP00560 | |
|---|---|
| Gene Symbol: | CCDC7 |
| RefSeq ID: | NM_001321115 |
| Repeat coordinate: | chr10:32828485-32828560 (+) |
| Repeat size: | 25 |
| Repeat region: | intron |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.293; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
32828468
.
GAAGAGGAAGAGGAAGAGGA
G
6722.09
10
32828473
rs866009163
GGAAGAGGAAGAGGAAGAAGAAGAA
AGAAGAGGAAGAGGAAGAAGAAGAA,GAAGAAGAGGAAGAGGAAGAAGAAGAA,GGAAGAA,G
84959.84
10
32828479
rs186393160
GGAAGAGGAAGAAGAAGAA
GGAA,AGAAGAGGAAGAAGAAGAA,GAAGAAGAGGAAGAAGAAGAA,GGAAGAA,GGAAGAAGAA,G
441895.33
10
32828483
.
GAGGAAGAAGAAGAAGAAGAAGAA
GAAGGAAGAAGAAGAAGAAGAAGAA,G
505822.94
10
32828486
.
G
GAAGAAGAAGAAGAAGAAGA
933611.01
10
32828488
rs865839254
A
AGAG,AGAGGAAGAG
948401.99
10
32828489
.
GA
G,GAAGAAGAAGAAGAAGAA,CA
896614.04
10
32828490
.
A
AGG
859585.20
10
32828491
rs56263707
A
G,AAGAG
789610.30
10
32828492
rs60384129
GAAGAAGAAGAAGAAGAA
GGAAGAAGAA,GGAAGAAGAAGAAGAA,GGAA,G,GGAAGAAGAAGAA
675922.32
10
32828493
.
A
AGG
676576.89
10
32828494
rs868459738
A
G,AGAG
728325.77
10
32828495
rs56368651
GA
G,GAAGAAGAAGAA,GAAGAAGAAGAAGAAGAAGAAGAACA
523364.82
10
32828497
rs147543247
A
G
501496.79
10
32828498
rs56300174
GAAGAAGAAGAAGAAGAA
GGAAGAAGAA,GGAA,G,GAAGAAGAAAGAAGAAGAAGAAGAA,GGAAGAA
355432.48
10
32828499
.
A
AGG
341315.35
10
32828500
.
A
G,AGAGGAAGAGGAAGAG,AGAGGAAGAGGAAGAGGAAGAG,AGAAGAG
370771.12
10
32828501
.
G
GAAGA
235672.16
10
32828503
rs867778552
AGAAGAAGAAG
GGAAGAAGAAG,A
243588.66
10
32828506
.
A
G
182058.60
10
32828508
.
A
G
115826.34
10
32828509
.
AGAAG
GGAAG,A,AGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAG,AGAGGAAGAGGAAGAGGAAGAGGAAG
122764.30
10
32828511
.
A
G
48872.45
10
32828512
rs536213508
A
AGAGGAAGAGGAAGAGGAAGAG,G
57223.57
10
32828513
.
G
T
20420.68
10
32828515
.
A
G,AGAGGAAGAGGAAGAGGAAGAGGAAGAG
65760.68
10
32828518
.
A
G,AGAGGAAGAGGAAGAGGAAGAGGAAGAG
11382.15
10
32828521
.
A
G
2073.13
10
32828525
.
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
G
2470.26
10
32828527
.
A
G
2605.66
10
32828529
.
A
G
2555.32
10
32828531
rs868350174
GAAGAAGAAGAAGAAGAAGAAGAAGAAGA
G
3015.73
10
32828533
.
A
G,AGAAGAAGAG
7972.41
10
32828534
rs181607360
GAAGAAGAAGAAGAAGAAGAAGAAGA
G,CAAGAAGAAGAAGAAGAAGAAGAAGA
3856.83
10
32828537
.
GAAGAAGAAGAAGAAGAAGAAGA
G
5870.85
10
32828539
.
A
AGAG
6352.94
10
32828540
.
GAAGAAGAAGAAGAAGAAGA
G,TAAGAAGAAGAAGAAGAAGA
40862.26
10
32828541
.
AAGAAGAAGAAGAAGAAGAAAG
AAAGAAGAAGAAGAAGAAAG,A
53889.95
10
32828543
rs562692852
GAAGAAGAAGAAGAAGA
G
60782.82
10
32828544
.
AAGAAGAAGAAGAAGAAAG
A,AAAGAAGAAGAAGAAAG,GAGAAGAAGAAGAAGAAAG
67447.19
10
32828545
.
A
C
67165.60
10
32828546
.
GAAGAAGAAGAAGA
TAAGAAGAAGAAGA,GAATAAGAAGAAGAAGA,G
73178.81
10
32828547
.
AAGAAGAAGAAGAAAG
A
73511.45
10
32828548
rs533108839
AG
A
74651.86
10
32828550
.
AAGAAGAAGAAAG
A,AAAGAAAG,AAAGAAGAAAG,TAGAAGAAGAAAG
80101.33
10
32828551
.
AG
A
79552.26
10
32828552
.
GAAGAAGAAA
G,GAAGAAGAAAGAAGAAA
81521.33
10
32828553
.
AAGAAGAAAG
A,AAAGAAAG
86284.58
10
32828555
rs140185782
GAAGAAA
AAAGAAA,GAAAAAGAAA,GAAGAAAAAGAAA,G,GAA
113177.99
10
32828556
.
AAGAAAG
A
86186.43
10
32828557
rs566623580
A
G
86412.88
10
32828558
rs867544849
GAAA
GAA,G,AAAA
89752.77
10
32828559
rs866326658
AAAG
A,AAAGAAG,GAAG,AAGAAAGAAG
117382.89
10
32828560
.
A
AG
28685.45
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
32828460
.
AAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
G
.
10
32828479
rs769424943
GGAAGAGGAAGAAGAAGAA
G
.
10
32828481
.
AAGAGG
AAGAAG
.
10
32828482
.
AGAGGA
AGAAGA
.
10
32828484
.
AGG
GAG
.
10
32828485
rs143503603
GGAA
G
.
10
32828485
rs71030015
GGAAGAAGAA
G
.
10
32828487
.
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
AAGAG
.
10
32828489
.
GAA
GAG
.
10
32828489
.
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAGGAAGAGGAAGAAGAA
.
10
32828490
.
A
G
.
10
32828491
rs56263707
A
G
.
10
32828491
.
AGA
GGA
.
10
32828491
.
AGAA
GGAA
.
10
32828491
.
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
G
.
10
32828491
.
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
G
.
10
32828492
rs60384129
GAAGAA
G
.
10
32828493
.
A
G
.
10
32828494
.
A
G
.
10
32828495
rs56368651
GA
G,GG
.
10
32828497
rs147543247
A
G
.
10
32828498
rs56300174
GAA
G
.
10
32828499
.
AAG
A
.
10
32828500
.
A
G
.
10
32828502
.
A
G
.
10
32828503
.
A
G
.
10
32828504
.
G
GA
.
10
32828505
.
A
G
.
10
32828505
.
AA
AG
.
10
32828506
.
A
G
.
10
32828508
.
A
G
.
10
32828509
.
A
G
.
10
32828510
.
GAAGAAGAAGAAGAAG
GAGGAAGAGGAAGAGG
.
10
32828512
rs536213508
A
G
.
10
32828512
.
AGAAGAA
GGAAGAG
.
10
32828512
.
AGAAGAAGAAGAA
GGAAGAGGAAGAG
.
10
32828514
.
A
G
.
10
32828515
.
A
G
.
10
32828516
.
GAAGA
GAGGA
.
10
32828517
.
A
G
.
10
32828518
.
A
G
.
10
32828518
.
AGAAGAAG
AGGAGAAG,GGAAGAGG
.
10
32828520
.
A
G
.
10
32828521
.
A
G
.
10
32828523
.
A
G
.
10
32828524
rs556296101
A
G
.
10
32828526
.
A
G
.
10
32828527
.
A
G
.
10
32828530
rs576059879
A
G
.
10
32828530
.
AGAAGAA
GGAAGAG
.
10
32828530
.
AGAAGAAG
ATTAGATG
.
10
32828532
.
A
G
.
10
32828533
.
A
G
.
10
32828533
.
AGAAGAAG
AGAGGAAG
.
10
32828534
rs181607360
G
C,T
.
10
32828536
rs544761829
A
G
.
10
32828537
.
G
GA
.
10
32828538
.
A
G
.
10
32828539
.
A
G
.
10
32828539
.
AG
TT
.
10
32828541
.
A
G
.
10
32828541
.
AAGA
GAAG
.
10
32828543
rs562692852
G
T
.
10
32828543
.
G
GA
.
10
32828548
rs533108839
A
G
.
10
32828553
.
A
G
.
10
32828555
rs140185782
G
A
.
10
32828555
rs199717552
G
GA
.
10
32828557
rs566623580
A
G
.
10
32828558
.
G
A
.
10
32828558
.
GA
AG,GG
.
10
32828559
.
A
AAAG,G
.
10
32828559
rs71515575
A
AAAG
.