| General information of RDP00558 | |
|---|---|
| Gene Symbol: | RPA3 |
| RefSeq ID: | NM_002947 |
| Repeat coordinate: | chr7:7673312-7673369 (-) |
| Repeat size: | 19 |
| Repeat region: | intron |
| Repeat unit: | CTG |
| Repeat conservation: | PhastCons_score: 0.506; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
7
7673310
.
TAGCAGCAGC
T
100
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
7
7673332
.
AGC
A
2665.93
7
7673343
.
C
T
425.51
7
7673344
.
A
G
1330.88
7
7673345
.
G
T
580.41
7
7673346
rs757852114
CA
C
8786.21
7
7673347
.
AG
A
9037.85
7
7673348
rs777389778
GCAGCAGCAGCA
G
8801.26
7
7673349
.
CAGCAGCAG
C
8440.29
7
7673350
.
AGCAGCAGC
AAGCAGC,A
15776.79
7
7673353
.
AGCAG
A
13006.83
7
7673357
.
G
A
13475.12
7
7673358
rs868158757
CA
C
11399.98
7
7673360
.
GCAGCAGCA
G
1954.63
7
7673362
.
A
AGCT
2999.81
7
7673363
.
GCAGCAGCAA
G
3809.23
7
7673364
rs746607382
CA
C
4576.92
7
7673366
rs796765870
GCA
G
4615.97
7
7673367
rs770679624
CAGCAAT
C,CAGCAGTAGCAAT,CAGCAGCAGTAGCAAT,TAGCAAT,CAGCAGCAGCAGTAGCAAT
77257.81
7
7673368
rs77667086
A
G,AGCAGCG,AGCG,AGCAGCAGCG,AGCAGCAGCAGCAGCG
730984.99
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
7
7673310
rs551829612
TAGCAGCAGCAGCAGC
TAGCAGC,TAGC,TAGCAGCAGCAGCAGCAGC,TAGCAGCAGCAGC,T,TAGCAGCAGC
10707556.62
7
7673315
.
GCA
G
8072072.18
7
7673317
.
A
G
7393036.64
7
7673322
.
C
A
1716418.61
7
7673327
.
G
T
348456.67
7
7673328
.
CAGCAGCA
C
348457.34
7
7673330
.
GC
G
321482.90
7
7673332
.
AGC
A
311812.83
7
7673335
.
AG
A
201173.02
7
7673336
.
G
A
201513.49
7
7673339
.
GC
G
117045.32
7
7673349
.
C
T
17371.06
7
7673354
.
G
T
12025.16
7
7673358
rs868158757
CA
C
5849.33
7
7673360
.
GCAGCAGCA
G
808.41
7
7673364
rs746607382
CA
C
3614.28
7
7673366
rs796765870
GCA
G
3606.64
7
7673368
rs77667086
A
G,AGCAGCG,AGCG,AGCAGCAGCG,AGCAGCAGCAGCG
187619.48
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
7
7673310
rs551829612
TAGC
TAGCAGC,T
.
7
7673310
rs56962308
TAGCAGC
TAGC,TAGCAGCAGC,TAGCAGCAGCAGCAGC,T
.
7
7673310
rs10527750
TAGCAGCAGC
TAGC,TAGCAGC,TAGCAGCAGCAGC,TAGCAGCAGCAGCAGCAGC,TAGCAGCAGCAGCAGCAGCAGC,T
.
7
7673310
rs148595964
TAGCAGCAGCAGC
TAGC,TAGCAGC,TAGCAGCAGC,T
.
7
7673310
.
TAGCAGCAGCAGCAGC
TAGCAGC,TAGCAGCAGC,TAGCAGCAGCAGC,T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGC
T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGCAGC
T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGCAGCAGC
TAGCAGCAGCAGCAGC,TAGCAGCAGCAGCAGCAGCAGC,T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGCAGCAGCAGC
T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
TAGCAGCAGCAGCAGCAGCAGCAGC,T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
T
.
7
7673310
.
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
T
.
7
7673311
.
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATG
AGCAGCAGCAGCAGCAATG
.
7
7673319
rs757765168
C
T
.
7
7673325
rs571644786
C
T
.
7
7673334
.
C
T
.
7
7673337
rs752660271
C
CAGT
.
7
7673346
rs757852114
CA
C
.
7
7673348
rs777389778
GCAGCAGCAGCA
G
.
7
7673352
rs771800996
C
T
.
7
7673364
rs746607382
CA
C
.
7
7673365
rs4034898
AGCAGC
A
.
7
7673366
.
GC
AT
.
7
7673366
rs796765870
GCA
G
.
7
7673367
rs538921224
C
CAGCAGCAGCAGCAGT,CAGCAGCAGT,CAGCAGT,T
.
7
7673367
rs770679624
C
CAGCAGCAGCAGCAGT,CAGCAGCAGT,CAGCAGT,CCA
.
7
7673368
rs77667086
A
AGCAGCAGCG,AGCAGCG,AGCG,G
.
7
7673368
rs776102769
A
AGCAGCAGCG,AGCAGCG,AGCG
.