| General information of RDP00520 | |
|---|---|
| Gene Symbol: | CSNK1E |
| RefSeq ID: | NM_001894 |
| Repeat coordinate: | chr22:38317349-38317373 (-) |
| Repeat size: | 8 |
| Repeat region: | intron |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.316; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Adenocarcinoma of lung (disorder) | NM_001894 | 0.30 | 0 | 0 | UNIPROT |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
22
38317309
.
GCTCCGCTCGGCCCCGGCCGGGCTCTGGCTCTGGGCTCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCC
G
7988.86
22
38317347
rs533879848
TCGC
T,TCGCCGC,TCGCCGCCGCCGCCGCCGCCGC,TCGCCGCCGCCGC,TCGCCGCCGCCGCCGC,TCGCCGCCGC
2658306.21
22
38317350
.
C
T
2465735.11
22
38317351
.
C
T
65494.62
22
38317360
.
C
G
2102.26
22
38317373
.
GCCTCCCTCCTCCCGGCCTCCTGCCCGCCCGC
TCCTCCCTCCTCCCGGCCTCCTGCCCGCCCGC,GCCGGCCTCCTGCCCGCCCGC,G
3695.37
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
22
38317282
.
AGCCGCCGCCGCCGCCGCCGCCGCCGCGCTCCGCTCGGCCCCGGCCGGGCTCTGGCTCTGGGCTCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCCTCCTCCCGGCCTCCTGCCCGCCCGCCCGCCCCCGCCGCCGGC
AGCCGCCGCCGCCGCCGCCGCCGCCACGCTCCGCTCGGCCCCGGCCGGGCTCTGGCTCTGGGCTCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCCTCCTCCCGGCCTCCTGCCCGCCCGCCCGCCCCCGCCGCCGGC
.
22
38317347
rs533879848
TCGC
TCGCCGC,TCGCCGCCGC,T
.
22
38317347
.
TCGCCGC
T
.