| General information of RDP00497 | |
|---|---|
| Gene Symbol: | RGPD2 |
| RefSeq ID: | NM_001078170 |
| Repeat coordinate: | chr2:86914020-86914056 (+) |
| Repeat size: | 12 |
| Repeat region: | intron |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.065; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
86913966
rs745749142
GGTGGCCTCGACCTGGCCGGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCGGGC
G
663.81
2
86913976
.
ACCTGGCCGGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGACGGCGGCGGCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCCTCGG
GCCTGGCCGGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGACGGCGGCGGCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCCTCGG,A,ACCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGACGGCGGCGGCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCCTCGG
2316.76
2
86913984
rs369152998
GGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGC
GGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGC,GGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGC,G,GGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGC,GGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGC,GGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGC
34270.10
2
86913995
.
GCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCT
TCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCT,G,GCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCT
90544.34
2
86914007
rs868304273
TCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCC
T,CCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCC,TCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCC,TCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCC
66117.21
2
86914016
.
CCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCT
C
60922.51
2
86914018
.
GGGCGGCGGCGGCGGC
GGGCGGCGGC,GGGC,GGGCGGC,GGGCGGCGGCGGC,G
886126.65
2
86914021
.
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
C,AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG,CCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
886500.17
2
86914022
.
G
T
895406.93
2
86914023
.
GCGGC
G
890702.91
2
86914024
.
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
C
859594.12
2
86914025
.
GGC
G
889941.12
2
86914027
.
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
C,CGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG,CGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
782451.70
2
86914028
.
G
C
227566.69
2
86914029
.
G
T
133287.61
2
86914030
.
CGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
C
151632.12
2
86914031
.
G
C
123434.69
2
86914032
.
G
A,T
140988.28
2
86914033
.
CGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
CGGCCTCGGCCTCCGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG,C,CCTGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG,CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG,CCTCGGCCTCCGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCTCGGCCCCGGCCTGGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCTGGCCG
96838.24
2
86914034
.
G
C
80875.03
2
86914035
.
G
T,A
121042.87
2
86914036
.
CGG
C,CCTCCGCCTGG
57137.30
2
86914037
.
G
C
50800.21
2
86914040
.
GGC
CGC,G
92443.11
2
86914041
.
GC
TC,G
88726
2
86914043
.
G
C
37222.16
2
86914044
.
GCGGCGGCGGCGGCCT
TCGGCGGCGGCGGCCT,G
40925.86
2
86914045
.
CGG
C
61411.60
2
86914047
.
G
A
64991.39
2
86914048
.
CGG
C
61083.41
2
86914049
rs868207628
G
C
37520.99
2
86914050
rs867324323
G
T,A
85451.84
2
86914051
.
CG
C
41914.20
2
86914053
.
G
T
85336.60
2
86914056
.
GCCT
G
61812.77
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
86913984
.
GGGCGGCGGCGGCGGCCTCGGCCTCGGCCTGGCCGGGCGGCGGC
G
.
2
86914018
.
GGGC
G
.
2
86914018
.
GGGCGGC
G
.
2
86914018
.
GGGCGGCGGC
G
.
2
86914018
.
GGGCGGCGGCGGC
G
.
2
86914018
.
GGGCGGCGGCGGCGGCGGCGGCGGC
G
.