| General information of RDP00494 | |
|---|---|
| Gene Symbol: | RGPD6 |
| RefSeq ID: | NM_001037866 |
| Repeat coordinate: | chr2:109794586-109794610 (+) |
| Repeat size: | 8 |
| Repeat region: | intron |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.338; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
109794586
.
GC
G
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
109794581
rs756229070
GGGGGGCGGCGGCGGCGGCGGCGGCGGC
G,GGGGAGGGGGCGGCGGCGGCGGCGGCGGCGGC
1544.60
2
109794584
.
GGGC
G,CGGC
2749.66
2
109794585
.
GGC
CGC,G
3727.80
2
109794586
rs749287092
GC
G
9998.74
2
109794587
rs771063668
C
G
38445.05
2
109794589
.
GC
G
688.51
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
109794581
rs756229070
GGGGGGCGGCGGCGGCGGCGGCGGCGGC
G
4287.80
2
109794584
.
GGGCGGCGGCGGC
G,GGGCGGCGGC,GGGCGGCGGCGGCGGCGGC,GGGCGGCGGCGGCGGCGGCGGCGGCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCGGCCGGGGGGCGGCGGCGGCGGCGGC,GGGCGGCGGCGGCGGCGGCGGC
47507.91
2
109794585
.
GGC
G
48710.04
2
109794586
rs749287092
GC
G
59090.39
2
109794587
rs771063668
C
CGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCGGCCGGGG,CGGCGGCGGCGGCGGCCTCGGCCCGGCCGGGG,CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCGGCCGGGG,G,CGGCGGCGGCGGCGGCGGCGGCGGCGGCCCGGCCGGGG
66431.13
2
109794589
.
G
GCGA
36109.41
2
109794590
.
CGG
GGG,AGG,C
5937.50
2
109794592
.
G
A
33084.63
2
109794593
.
C
CGGCGGCGGCGGCGGCGGCGGCCTCGGCCCCGGCCCCGGCCGGGG,G
5026.20
2
109794594
.
GGCGGCGGCGGCGGC
G
2456.90
2
109794596
rs757942656
CGGCGGCGGCGGCGGGGGG
C,CCTCGGCCCCGGCCCGGCCGGGGGGCGGCGGCGGCGGGGGG,CCCCGGCCCCGGCCCGGCCGGGGGGCGGCGGCGGCGGGGGG,CCGGCGGCGGCGGGGGG,CGGCGGCGGCGGCGGCGGCGGCGGCCTCGGCCCGGCCGGGGGGCGGCGGCGGCGGGGGG
4894.36
2
109794597
.
GGCGGCGGCGGC
G
3880.59
2
109794598
.
G
GCCTCGGCCCGGCCGGGGGGCGGCGA
2556.25
2
109794599
.
CGGCGGCGGCGGGGGG
CCGGCGGCGGGGGG,CCGGCGGGGGG,C,CCTCGGCCCGGCCGGGGGGCGGCGGCGGGGGG
9725.04
2
109794600
rs746441754
GGCGGCGGC
G,GGCTGCGGCGGC
28341.17
2
109794601
.
G
GCCT,GCCTCGGCCCGGCCGGGGGGCGGCGA
11391.25
2
109794602
.
CGGCGGCGGGGGG
CCGGCGGGGGG,CCTCGGCCCGGCCGGGGGGCGGCGGGGGG,C,CCTCGGCCCCGGCCCGGCCGGGGGGCGGCGGGGGG,CCCCGGCCCGGCCGGGGGGCGGCGGGGGG
70181.41
2
109794603
rs574513766
GGCGGC
G,CGCGGC,AGCGGC
78444.02
2
109794604
rs543726285
G
T,GCCT,GCCC,GCCTCGTCC
39647.72
2
109794605
.
CGG
C,CCGGGGGGGGG
10204.33
2
109794606
rs764673008
GGC
CGC,G
750642.54
2
109794607
rs747884750
GC
G,GCCCCGGCCCGGCC,GCC,GCCC
677426.50
2
109794609
.
G
C,GGCGGCCCGGCCGGGGGGCGGCGGCGGCGGCGGCGGCGGC
51165.35
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
109794581
rs756229070
GGGGGGCGGCGGCGGCGGCGGCGGCGGC
G
.
2
109794583
rs778060701
GGGGCGGCGGCGGCGGCGGCGGCGGC
G
.
2
109794584
.
GGGC
G
.
2
109794586
.
GCGG
GCGA
.
2
109794586
rs749287092
GC
G
.
2
109794587
rs771063668
CGGCGGCGGCGGCGGCGGCGGCGGGGGG
C
.
2
109794589
.
G
A
.
2
109794589
.
G
GCGA
.
2
109794590
.
C
CGAC
.
2
109794592
.
G
A
.
2
109794596
rs757942656
CGG
C
.
2
109794599
.
CGG
C
.
2
109794600
rs746441754
GGCGGCGGC
G
.
2
109794603
rs574513766
G
C
.
2
109794603
.
GGCGGC
G
.
2
109794604
rs543726285
G
C
.
2
109794604
.
GCGGC
GCCG,GCGGCCG,G
.
2
109794606
rs764673008
G
C
.
2
109794606
.
GGC
CG,CGG,GGCCG
.
2
109794607
rs747884750
GC
GCCG,GCGGCCG,GCGGCGGCCG,G
.
2
109794608
.
CG
CCGG
.
2
109794608
.
CGGGGGGGGC
CCGGGGGGGGGC
.
2
109794608
.
CGGGGGGGGCGG
CCGGGGGGGGGCGG
.
2
109794608
.
C
CCG,CGGCCG,CGGCGGCCG
.
2
109794608
.
CG
CC,CCGG,C,CGGCCGG
.
2
109794610
.
G
GCC
.