| General information of RDP00446 | |
|---|---|
| Gene Symbol: | HRAS |
| RefSeq ID: | NM_001130442 |
| Repeat coordinate: | chr11:535289-535313 (-) |
| Repeat size: | 8 |
| Repeat region: | intron |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.006; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to OMIM: | ||
|---|---|---|
| Phenotype | OMIM_id | Location |
| {Thyroid carcinoma, follicular, somatic}, 188470 (3) | 190020 | 11p15.5 |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Mammary Carcinoma, Human | NM_001130442 | 0.30 | 4 | 0 | CTD_human |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
11
535291
.
CGCCG
C
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
11
535284
rs549849454
ACCCACCCGCCGCCGCCGCCGCCGCCG
A,GCCCACCCGCCGCCGCCGCCGCCGCCG
5896.86
11
535289
.
CCCGCCGCCGCCG
CCCGCCG,CCCGCCGCCG,CCCGCCGCCGCCGCCG,CCCG,C,CCCGCCGCCGCCGCCGCCGCCG
6446935.03
11
535290
.
CCGCCGCCGCCGCCGCCGCCGCCGCTTA
C
5959300.80
11
535295
.
G
A
5864415.54
11
535303
.
C
T
1415.27
11
535306
rs111919967
C
CGCT,T,CGCCGCT,CGCTGCCGCT,CGCTGCCGCCGCCGCCGCT
1607641.07
11
535309
rs867047199
C
T
520.02
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
11
535289
.
CCCG
C
.
11
535289
.
CCCGCCG
CCCGCCGCCG,C
.
11
535289
.
CCCGCCGCCG
C
.
11
535289
.
CCCGCCGCCGCCG
C
.
11
535291
rs530195515
CGCCG
C
.
11
535306
rs111919967
C
T
.
11
535306
.
C
CGCT
.