| General information of RDP00430 | |
|---|---|
| Gene Symbol: | AHCTF1 |
| RefSeq ID: | NM_001323342 |
| Repeat coordinate: | chr1:246931478-246931511 (-) |
| Repeat size: | 11 |
| Repeat region: | intron |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.013; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
246931434
.
CCCGCGCACGCCCGGCCTAGGCCCGGCGCTCGCGGGGCAGAAGCCCCG
C
4194.21
1
246931459
rs563225195
GCGCTCGCGGGGCAGAAGCCCCGCCGCCGCCGCCGCCGCCGC
G
15160.25
1
246931476
.
GCCCCGCCGCCGCCGCCGCCGC
G
14797.86
1
246931478
rs754285823
CCCGCCGCCGCCGCCG
CCCGCCGCCG,CCCGCCGCCGCCG,C,CCCGCCGCCGCCGCCGCCG,CCCGCCGCCGCCGCCGCCGCCGCCG,CCCGCCGCCGCCGCCGCCGCCG
6465273.46
1
246931481
.
G
GCCGCCGCCGCCGCCGCCCGCGGGGCAGAAGCC
5622008.95
1
246931482
.
CCGCCG
C
4513876.84
1
246931493
.
G
A
108672.56
1
246931506
rs867559842
CCGCCGCGGGTCCAGGCCGCGCGACCCGCCCTCCGCCG
TCGCCGCGGGTCCAGGCCGCGCGACCCGCCCTCCGCCG,C
2452.34
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
246931459
.
GCGCTCGCGGGGCAGAAGCCCCGCCGCCGCCGCCGCCGCCGC
G
.
1
246931478
.
CCCG
CCCGCCG,C
.
1
246931478
rs754285823
CCCGCCG
CCCG,CCCGCCGCCG,CCCGCCGCCGCCG,C
.
1
246931478
.
CCCGCCGCCGCCGCCG
CCCGCCGCCG,C
.
1
246931479
.
CCGCCGCCG
CCG
.
1
246931494
.
CCG
CCGC
.
1
246931499
.
GCC
GCCG
.
1
246931508
.
G
C
.