DRED

General information of RDP00423
Gene Symbol:KHDC1
RefSeq ID:NM_001251874
Repeat coordinate:chr6:73263041-73263068 (-)
Repeat size:9
Repeat region:intron
Repeat unit:CCG
Repeat conservation:PhastCons_score: 0.034; Repeat Conservation from UCSC Genome Browser
Amino acid sequence:-
Gene expression and GO annotation: BioGPS
Protein expression:Human Protein Altas
Gene conservation:Gene Conservation from UCSC Genome Browser
Mapping repeat track to gnomAD:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
73263039
rs544476875
GGGC
GGGCGGCGGCGGCGGC,GGGCGGC,GGGCGGCGGCGGC,GGGCGGCGGC,GGGCGGCGGCGGCGGCGGC,G
1031374.39
6
73263046
.
GGCGGCGGCGGCGGCGGCGGCGGCA
G
7633.26
6
73263052
.
GGCGGCGGCGGCGGCGGCA
G,GGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCA
5117.34
6
73263055
rs765134828
GGCGGCGGCGGCGGCA
G
15307936.74
6
73263058
.
GGCGGCGGCGGCA
G
15305730.19
6
73263061
.
GGCGGCGGCA
G,GGCGGCGGCAGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCAGCGGCGGCA
15296514.33
6
73263064
rs373485269
GGCGGCAGCGGCGGCA
GGCGGCGGCA,G,GGCGGCAGCGGCGGCAGCGGCAGCGGCGGCA
15291326.67
6
73263067
.
G
GGCA,A
15372457.81
Mapping repeat track to Kaviar:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
73263039
.
GGGCGGC
G
.
6
73263039
rs764402037
GGGCGGCGGCGGCGGC
G
.
6
73263045
.
CGGCGGCGGCGGCGGCGGCGGCGGCA
CGGCGGCGGCG
.
6
73263050
.
GCGGCGGCGGCGGCGGCGGCA
GCGGCG
.
6
73263052
.
GGCGGCGGCGGCGGCGGCA
G,GGCG
.
6
73263052
.
GGCGGCGGCGGCGGCGGCA
G,GGCG,GGCGGCGGCGGCG,GGCGGCGGCGGCGGCGGCG
.
6
73263054
.
C
G
.
6
73263054
.
CGGCGGCGGCGGCGGCA
CG,CGGCG
.
6
73263055
.
GGCGGCGGCGGCGGCA
G,GGCGGCGGCG
.
6
73263055
rs765134828
G
GGCGGCGGCGGCGGCA
.
6
73263055
rs574127460
GGCGGCGGCGGCGGCA
G,GGCG,GGCGGCGGCG,GGCGGCGGCGGCGGCAGCA,GGCGGCGGCGGCGGCG
.
6
73263056
.
GCGGCGGCGGCGGCAG
G
.
6
73263056
.
GCGGCGGCGGCGGCAGCGGCGGCAG
GCGGCGGCAG
.
6
73263058
.
GGCGGCGGCGGCA
G
.
6
73263058
.
GGCGGCGGCGGCA
G,GGCGGCGGCGGCG
.
6
73263059
.
GCGGCGGCGGCAGC
GC
.
6
73263064
rs373485269
G
A
.
6
73263067
.
G
GGCA
.
6
73263068
.
GCA
GCG
.