| General information of RDP00416 | |
|---|---|
| Gene Symbol: | CRTAC1 |
| RefSeq ID: | NM_001206528 |
| Repeat coordinate: | chr10:98029492-98029528 (-) |
| Repeat size: | 12 |
| Repeat region: | intron |
| Repeat unit: | CCG |
| Repeat conservation: | PhastCons_score: 0.003; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
98029512
.
GGCGGCGGCGGCGGCGGCA
G
100
10
98029518
.
GGCGGCGGCGGCA
G
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
98029488
rs796585183
AGCAGCGGCGGCGGCG
AGCGGCGGCGGCAGCGGCGGCGGCG,AGCGGCGGCG,AGCGGCGGCAGCGGCGGCGGCG,GGCAGCGGCGGCGGCG,A,AGCGGCGGCGGCGGCAGCGGCGGCGGCG
735943.15
10
98029491
rs484357
AGCGGCG
GGCGGCG,AGCGGCGGCGGCGGCGGCG,AGCGGCGGCGGCGGCG,AGCGGCGGCG,A,AGCGGCGGCGGCGGCGGCGGCGGCGGCG
4245162.16
10
98029494
rs796606604
G
A
577495.50
10
98029495
.
G
A
493969.34
10
98029496
.
C
CGGT
494987.34
10
98029497
.
G
A
493558.49
10
98029500
.
G
A
107905.11
10
98029502
.
C
T
74647.28
10
98029503
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCA
G
78023.27
10
98029505
.
C
T
52371.66
10
98029506
.
G
GGCGGCGGCAGCA
51999.67
10
98029509
.
GGCGGCGGCGGCGGCGGCGGCA
G
55666.94
10
98029512
rs534059691
GGCGGCGGCGGCGGCGGCA
G,AGCGGCGGCGGCGGCGGCA,GGCGGCGGCAGCGGCGGCGGCGGCGGCA
533783.18
10
98029513
.
G
A
529880.83
10
98029514
.
C
G
530077.64
10
98029515
.
GGCGGCGGCGGCGGCA
G
648057.01
10
98029517
.
C
CGGCGGCGGT
648467
10
98029518
rs577348846
GGCGGCGGCGGCA
G
764716.91
10
98029520
.
C
CGGCGGCGGT
735290.79
10
98029521
rs199645822
GGCGGCGGCA
G
903323.01
10
98029524
.
GGCGGCA
G
903271.53
10
98029527
rs111370186
GGCA
AGCA,GGCAGCA,G,GGCGGCGGCGGCAGCA,GGCGGCGGCGGCGGCGGCGGCGGCAGCA
979878.06
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
98029488
.
AGCAGCG
A
.
10
98029488
.
AGCAGCGGCGGCG
A
.
10
98029488
.
AGCAGCGGCGGCGGCGGCGGCGGCGGCGGCG
A
.
10
98029491
.
AGCG
A,AGCA
.
10
98029491
rs773786668
AGCGGCG
A
.
10
98029491
.
AGCGGCGGCGGCG
A
.
10
98029491
.
AGCGGCGGCGGCGGCGGCGGCG
A
.
10
98029494
rs796606604
G
A
.
10
98029496
.
C
CG
.
10
98029497
.
GGCGGCGGCGGC
GGCGGCGGCGGGC
.
10
98029503
.
G
A
.
10
98029505
.
CGG
C
.
10
98029506
.
G
A
.
10
98029509
.
G
A
.
10
98029511
.
C
T
.
10
98029512
.
G
A
.
10
98029512
rs534059691
GGCGGCGGCGGCGGCGGCA
G
.
10
98029515
.
G
A
.
10
98029515
.
GGCGGCGGCGGCGGCA
G
.
10
98029517
.
C
A
.
10
98029518
.
G
A
.
10
98029518
rs577348846
GGCGGCGGCGGCA
G
.
10
98029521
.
G
A
.
10
98029521
rs199645822
GGCGGCGGCA
G
.
10
98029524
.
G
A
.
10
98029527
rs111370186
G
A
.