| General information of RDP00413 | |
|---|---|
| Gene Symbol: | PTPN13 |
| RefSeq ID: | NM_006264 |
| Repeat coordinate: | chr4:86747550-86747583 (+) |
| Repeat size: | 11 |
| Repeat region: | intron |
| Repeat unit: | CAG |
| Repeat conservation: | PhastCons_score: 0.001; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
86747533
rs72329456
TAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGC
TAGCAGCAGCAGC,TAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGC,CAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGC,TAGCAGCAGCAGCAGC,TAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGC,T
369275.87
4
86747547
.
GCGGCA
G
1528265.18
4
86747549
rs755425633
GGCAGCAGCAGCAGCA
GGCAGCAGCAGCA,GGCAGCAGCAGCAGCAGCA,GGCA,AGCAGCAGCAGCAGCA,G
2000553.86
4
86747552
rs570062270
A
G
492219.66
4
86747553
.
G
T
387970.47
4
86747554
.
C
T
387860.38
4
86747555
.
A
AGCAGCAGCAGCAGCG
384941.04
4
86747556
.
G
C
375530.53
4
86747560
.
C
T
264244.27
4
86747566
.
C
T
5318.58
4
86747569
rs145000640
CAGCAGCAGCAGCAGT
TAGCAGCAGCAGCAGT,C
1386870.94
4
86747570
.
A
G
4818.23
4
86747572
rs749954503
CAGCAGCAGCAGT
C,TAGCAGCAGCAGT
1372640.89
4
86747573
rs551265251
A
G
1372220.72
4
86747575
.
CAGCAGCAGT
C
1369220.13
4
86747581
rs549495260
CAGT
C,TAGT,CAGTAGT,CAGCAGTAGT
1400972.85
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
86747533
rs796362246
TAGCAGCAGCAGCAGCGGC
T
.
4
86747533
.
TAGCAGCAGCAGCAGCGGCAGCAGC
T
.
4
86747534
.
AGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGC
.
4
86747547
.
GCGGCA
GCAGCA
.
4
86747549
rs781137782
GGCA
G
.
4
86747549
.
GGCAGCA
G
.
4
86747549
.
GGCAGCAGCAGCA
G
.
4
86747549
.
GGCAGCAGCAGCAGCA
G
.
4
86747551
.
C
T
.
4
86747552
rs570062270
A
G
.
4
86747553
.
G
A
.
4
86747554
.
C
T
.
4
86747557
.
C
T
.
4
86747557
.
CAG
CA
.
4
86747558
rs552093373
A
G
.
4
86747561
rs530806481
A
G
.
4
86747566
.
C
T
.
4
86747569
rs145000640
C
T
.
4
86747572
.
C
T
.
4
86747572
rs749954503
CAGCAGCAGCAGT
CAGCAGCAGTAGC,C
.
4
86747573
rs551265251
A
G
.
4
86747575
.
C
T
.
4
86747576
.
AGC
AGT
.
4
86747578
rs28441315
C
T
.
4
86747578
.
CAGCAGT
CAGTAGC
.
4
86747581
rs549495260
C
T
.
4
86747581
.
CAGT
C,TAGC
.
4
86747581
.
C
CAGT
.