| General information of RDP00356 | |
|---|---|
| Gene Symbol: | POU4F2 |
| RefSeq ID: | NM_004575 |
| Repeat coordinate: | chr4:146639307-146639340 (+) |
| Repeat size: | 11 |
| Repeat region: | CDS |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.345; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | GGGGGGGGGG |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
146639305
~rs67907220
TGGCGGCGGCGGCGGC
TGGCGGC,TGGCGGCGGCGGCGGCGGC,T,TGGC,TGGCGGCGGCGGC
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
146639299
.
TGGTGGTGGC
T
3753.42
4
146639302
rs748395865
TGGTGGCGGCGGCGGCGGCGGC
TGGCGGTGGCGGCGGCGGCGGCGGC,T,TGGCGGCGGCGGC,TGGCGGC
7240.13
4
146639303
.
GGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCA
G
7000.98
4
146639305
rs530695040
TGGCGGCGGCGGCGGC
TGGCGGCGGCGGC,TGGCGGCGGCGGCGGCGGC,TGGCGGC,TGGC,TGGCGGCGGC,T
34438872.66
4
146639308
rs189899086
C
T,CGGT
11304636.63
4
146639311
.
C
T,CGGA
10586342.10
4
146639312
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCAGTGGCAGCA
AGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCAGTGGCAGCA,G
10243288.27
4
146639314
rs772231658
C
T,CGGT,CGGA
10235309.60
4
146639315
.
GGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCAGTGGCAGCA
G,GGCTGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCAGTGGCAGCA,AGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCAGTGGCAGCA
2859689.63
4
146639316
rs760328200
G
GCGA
2815827.64
4
146639317
rs768516158
CGGCGGCGGCGGCGGCGGCGGCGGA
TGGCGGCGGCGGCGGCGGCGGCGGA,C
2874563.70
4
146639318
rs563277042
GGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCAGTGGCAGCA
G
497778.04
4
146639320
rs776382476
CGGCGGCGGCGGCGGCGGCGGA
TGGCGGCGGCGGCGGCGGCGGA,CGGTGGCGGCGGCGGCGGCGGCGGA,C
494810.81
4
146639323
.
C
CGGT
107723.87
4
146639324
rs781008874
G
A
86844.04
4
146639325
rs761525997
G
GCGA
69038.98
4
146639326
.
CGGCGGCGGCGGCGGA
CGGTGGCGGCGGCGGCGGA,C
69959.57
4
146639329
.
C
CGGT
34985.69
4
146639330
.
G
GGCA
30938.51
4
146639332
rs765040992
CGGCGGCGGA
AGGCGGCGGA,CGGCGGCGGAGGCGGCGGA,CGGCGGCGGCGGAGGCGGCGGA,C
44328.21
4
146639335
rs767856113
CGGCGGA
CGGTGGCGGA,TGGCGGA,C
40992.30
4
146639336
.
G
C
32598.61
4
146639338
rs753272645
CGGA
AGGA,CGGAGGA,C
34161.39
4
146639340
.
G
GCGA
32821.50
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
146639305
rs530695040
TGGCGGCGGCGGC
TGGCGGCGGCGGCGGC,TGGC,TGGCGGCGGCGGCGGCGGCGGC,T,TGGCGGCGGCGGCGGCGGCGGCGGC,TGGCGGCGGCGGCGGCGGCGGCGGCGGC
13617334.70
4
146639308
rs189899086
C
T,CGGT
2222941.09
4
146639310
.
G
GCGC
2184389.11
4
146639312
.
G
A
2143807.70
4
146639316
rs760328200
G
GCGA
333350.13
4
146639317
rs768516158
C
T
337880.23
4
146639318
rs563277042
GGCGGCGGCGGCGGCGGCGGCGGAGGCCGAAGCAGCAGCTCCAGCAGCAGTGGCAGCA
G
72429.86
4
146639320
rs776382476
C
CGGA
72813.39
4
146639324
rs781008874
G
A
9577.08
4
146639332
rs765040992
C
CGGCGGCGGCGGA
8279.65
4
146639335
rs767856113
C
CGGT
1694.68
4
146639336
.
G
GGCA
1295.37
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
4
146639302
rs756518481
TGGTGGCGGC
T
.
4
146639302
rs781757657
TGGTGGCGGCGGCGGCGGCGGC
T
.
4
146639305
rs746013278
TGGC
T,TGGCGGC
.
4
146639305
rs778938652
TGGCGGC
T,TGGCGGCGGC
.
4
146639305
rs763100230
TGGCGGCGGC
T,TGGCGGC,TGGCGGCGGCGGC
.
4
146639305
rs771187205
TGGCGGCGGCGGC
T,TGGCGGCGGCGGCGGC
.
4
146639305
rs771897159
TGGCGGCGGCGGCGGC
T,TGGC,TGGCGGC,TGGCGGCGGC,TGGCGGCGGCGGC,TGGCGGCGGCGGCGGCGGC
.
4
146639306
.
GGCGGCGGCGGCGGCG
GGCGGCG
.
4
146639308
rs189899086
C
T
.
4
146639314
.
C
T
.
4
146639314
rs772231658
C
CGGC,CGGT
.
4
146639316
rs760328200
G
GCGA
.
4
146639317
rs768516158
CGGCGGCGGCGGCGGCGGCGGCGGA
C
.
4
146639318
rs563277042
G
T
.
4
146639320
rs776382476
CGGCGGCGGCGGCGGCGGCGGA
C
.
4
146639321
.
G
A
.
4
146639324
rs781008874
G
A
.
4
146639325
rs761525997
G
GCGA
.
4
146639332
rs765040992
C
CGGCGGCGGA,CGGCGGCGGCGGA,CGGT
.
4
146639335
.
C
CG
.
4
146639335
rs767856113
C
CGGT
.
4
146639338
rs753272645
C
CGGA
.