DRED

General information of RDP00341
Gene Symbol:HOXD11
RefSeq ID:NM_021192
Repeat coordinate:chr2:176107582-176107600 (+)
Repeat size:6
Repeat region:CDS
Repeat unit:CGG
Repeat conservation:PhastCons_score: 0.964; Repeat Conservation from UCSC Genome Browser
Amino acid sequence:GGGGG
Gene expression and GO annotation: BioGPS
Protein expression:Human Protein Altas
Gene conservation:Gene Conservation from UCSC Genome Browser
Mapping repeat track to DisGeNET:
Disease_nameRefSeqScoreNofPmidsNofSnpsSource
Mammary Carcinoma, HumanNM_0211920.3010CTD_human
Mapping repeat track to ExAC:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
176107581
rs778507016
CGCGGCGGCG
CGCGGCG,CGCG,CGCGGCGGCGGCG,C,TGCGGCGGCG
149799.01
2
176107584
rs577549025
G
C,T
145728.21
2
176107586
.
C
T
14527.82
2
176107587
rs775475252
G
A
19240.16
2
176107589
.
CGGCGGCGGCGGCAGCGCGGGGGGCGGCAGCAGCGGGGGCGGCCCCGGCGGG
C
4377.77
2
176107590
rs760375259
G
A
4620.52
2
176107592
.
C
A
986.89
2
176107595
rs770123798
CGGCGGCAGCGCGGGG
TGGCGGCAGCGCGGGG,C
1743.93
2
176107596
.
G
A
1497.53
2
176107599
rs544796078
G
A
1831.84
Mapping repeat track to gnomAD:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
176107581
rs778507016
CGCG
C,CGCGGCG
5353.40
2
176107584
rs577549025
G
C
2904.18
2
176107587
rs775475252
G
A
279.63
2
176107592
.
C
T
249.68
2
176107594
.
G
GCGA
602.89
2
176107596
.
G
C,A
654.46
Mapping repeat track to Kaviar:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
176107581
.
CGCGGCGGCG
C,CGCG,CGCGGCG,CGCGGCGGCGGCG,TGCGGCGGCG
.
2
176107581
rs764963110
CGCG
C
.
2
176107581
rs762528392
CGCGGCG
C
.
2
176107581
rs765928860
CGCGGCGGCG
C
.
2
176107584
rs577549025
G
C,T
.
2
176107587
rs775475252
G
A
.
2
176107590
rs760375259
G
A
.
2
176107592
.
C
A
.
2
176107595
rs770123798
C
T
.
2
176107595
.
CGGCGGCAGCGCGGGG
C,TGGCGGCAGCGCGGGG
.
2
176107595
rs751022520
CGGCGGCAGCGCGGGG
C
.
2
176107598
.
C
CG
.
2
176107599
rs544796078
G
A,T
.
2
176107599
rs755579798
G
GGCA
.
2
176107600
rs773314916
G
A
.