| General information of RDP00330 | |
|---|---|
| Gene Symbol: | CAPNS1 |
| RefSeq ID: | NM_001003962 |
| Repeat coordinate: | chr19:36141040-36141058 (+) |
| Repeat size: | 6 |
| Repeat region: | CDS |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.959; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | GGGGG |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Malignant neoplasm of prostate | NM_001003962 | 0.32 | 1 | 0 | CTD_human |
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
19
36141037
.
AGGGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGGTGGGGGCCTGGGAAATGTGCTTGGAGGCCTGATCAGCGGGGCCGG
A
555.14
19
36141038
rs772150558
GGGCGGCGGC
GGGCGGC,GGGC,GGGCGGCGGCGGC,G
258617.95
19
36141041
.
C
A
253530.19
19
36141042
rs768772206
G
T
10896.97
19
36141044
.
C
T
10778.21
19
36141047
.
C
T
7493.49
19
36141050
.
C
G
1302.59
19
36141053
rs770936240
CGGCGGGGGA
TGGCGGGGGA,C,AGGCGGGGGA
2664.79
19
36141054
rs774127921
G
T
2280.14
19
36141056
rs567500165
C
G
23714.89
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
19
36141038
rs772150558
GGGCGGCGGC
GGGCGGC,GGGC,G,GGGCGGCGGCGGC
2376.94
19
36141053
rs770936240
C
CGGCGGGGGA
114.37
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
19
36141038
rs748037068
GGGC
G
.
19
36141038
rs747214647
GGGCGGC
G
.
19
36141038
rs778007767
GGGCGGCGGC
G
.
19
36141042
rs768772206
G
T
.
19
36141043
.
G
A
.
19
36141053
rs770936240
CGGCGGGGGA
C
.
19
36141054
rs774127921
G
T
.
19
36141056
rs567500165
C
CG,G
.
19
36141056
.
C
CG
.