| General information of RDP00292 | |
|---|---|
| Gene Symbol: | SHCBP1L |
| RefSeq ID: | NM_030933 |
| Repeat coordinate: | chr1:182952865-182952883 (-) |
| Repeat size: | 6 |
| Repeat region: | CDS |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.052; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | AAAAA |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
182952865
.
TCCG
T
.
1
182952868
rs13373887
G
T
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
182952865
rs780795623
TCCGCCGCCG
TCCGCCG,TCCG,TCCGCCGCCGCCGCCG,TCCGCCGCCGCCG,TCCGCCGCCGCCGCCGCCG,T
712791.13
1
182952868
rs13373887
G
T
1855441.66
1
182952869
rs778724547
C
T
33630.77
1
182952871
.
G
T
23687.96
1
182952875
.
C
T
47.11
1
182952877
rs748096896
G
A
11609.48
1
182952880
rs772037310
G
A
2878.87
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
182952865
rs780795623
TCCGCCGCCG
TCCGCCG,TCCGCCGCCGCCGCCG,T,TCCGCCGCCGCCG
156910.21
1
182952868
rs13373887
G
T
556850.29
1
182952870
.
C
T
4191.03
1
182952873
.
C
T
3074.05
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
182952865
rs750758892
TCCG
TCCGCCGCCG,T
.
1
182952865
rs747708113
TCCGCCG
T
.
1
182952865
rs769207345
TCCGCCGCCG
TCCG,TCCGCCG,TCCGCCGCCGCCG,TCCGCCGCCGCCGCCG,TCCGCCGCCGCCGCCGCCG,T
.
1
182952868
rs13373887
G
T
.
1
182952869
rs778724547
C
T
.
1
182952871
.
GCCG
TCTC
.
1
182952871
.
GCCGCCG
TCTC
.
1
182952872
.
CCGCCGCCG
CCGCCTCTC
.
1
182952874
.
GCCG
TCTC
.
1
182952876
.
C
A
.
1
182952877
rs748096896
G
A,C
.
1
182952877
.
GCCG
TCTC
.
1
182952879
.
C
CG
.
1
182952880
rs772037310
G
A
.
1
182952882
.
C
CG
.