| General information of RDP00288 | |
|---|---|
| Gene Symbol: | FOXE1 |
| RefSeq ID: | NM_004473 |
| Repeat coordinate: | chr9:97854419-97854449 (+) |
| Repeat size: | 10 |
| Repeat region: | CDS |
| Repeat unit: | CCG |
| Repeat conservation: | PhastCons_score: 0.109; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | AAAAAAAAA |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to OMIM: | ||
|---|---|---|
| Phenotype | OMIM_id | Location |
| {Thyroid cancer, nonmedullary, 4}, 616534 (3) | 602617 | 9q22.33 |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| THYROID CANCER, NONMEDULLARY, 4 | NM_004473 | 0.70 | 1 | 1 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
| Mapping repeat track to ClinVar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
97854418
95097
AGCCGCC
A
.
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
97854412
~rs11279082
TGCCGCAGCCGCC
T
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
97854412
rs777312882
TGCCGCAGCCGCCGCC
TGCC,TGCCGCCGCC,T,CGCCGCAGCCGCCGCC
309985.80
9
97854418
rs562189970
AGCCGCCGCCGCC
AGCCGCC,CGCCGCCGCCGCC,A,AGCCGCCGCCGCCGCC,AGCC
8294719.95
9
97854422
rs778487508
G
A
8154721.56
9
97854423
.
C
A
8143997.78
9
97854424
rs371516340
C
A,CGCTGCCGCA
8347041.93
9
97854426
.
C
T
252598.40
9
97854427
rs771953408
C
T,A
245105.55
9
97854428
.
G
A
156544.60
9
97854430
rs775448711
C
A
518581.36
9
97854431
.
G
A
17081.15
9
97854433
rs746922579
C
A
21558.01
9
97854442
.
C
T
3110.51
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
97854412
rs777312882
TGCCGCAGCCGCCGCC
TGCC,TGCCGCAGCCGCAGCCGCCGCC,TGCCGCCGCC,T,TGCCGCC,GGCCGCAGCCGCCGCC
95035.33
9
97854418
rs562189970
AGCCGCCGCCGCC
AGCCGCC,AGCC,AGCCGCCGCCGCCGCC,A,AGCCGCCGCC
10016435.52
9
97854421
rs565664344
C
CGCA
9782269.81
9
97854424
rs371516340
C
CGCA,A,CGCTGCCGCA
9816258.42
9
97854426
.
C
CTG
170562.20
9
97854427
rs771953408
C
T
171558.01
9
97854428
.
G
A
114774.84
9
97854430
rs775448711
C
A
772508.93
9
97854431
.
G
A
11584.79
9
97854433
rs746922579
C
A
12161.67
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
97854412
.
TGCCGCAGCCGCCGCCGCCGCCGCCGCC
CGCCGCAGCCGCCGCCGCCGCCGCCGCC,T,TGCCGCAGCCGCAGCCGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCC,TGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCC
.
9
97854412
rs762571620
TGCCGCAGCCGCC
T,TGCCGCA
.
9
97854412
rs774004748
TGCCGCAGCCGCCGCC
T
.
9
97854412
rs761789400
TGCCGCAGCCGCCGCCGCCGCCGCCGCC
T
.
9
97854417
.
CAGCCGCCGCCGC
CAGCCGCAGC
.
9
97854418
.
AGCCGCCGCCGCCGCC
A,AGCC,AGCCGCC,AGCCGCCGCC,AGCCGCCGCCGCCGCCGCC,CGCCGCCGCCGCCGCC
.
9
97854418
.
AGCC
A
.
9
97854418
rs71369530
AGCCGCC
A,AGCC,AGCCGCCGCC,AGCCGCCGCTGCCGCA
.
9
97854418
rs758622111
AGCCGCCGCC
A
.
9
97854418
rs755911172
AGCCGCCGCCGCC
A,AGCC,AGCCGCA
.
9
97854418
rs766143203
AGCCGCCGCCGCCGCC
A
.
9
97854419
.
GCCGCCGC
GC
.
9
97854419
.
GCCGCCGCCGCCG
GCCGCCG
.
9
97854419
.
GCCGCCGCCGCCGC
GCCGCAGC
.
9
97854421
rs565664344
C
G,T
.
9
97854422
rs778487508
G
A
.
9
97854424
rs371516340
C
A
.
9
97854424
.
CGCCGCC
A
.
9
97854424
rs755194188
C
CGCC,CGCTGCCGCA
.
9
97854427
rs771953408
C
T
.
9
97854430
rs775448711
C
A
.
9
97854433
rs746922579
C
A
.
9
97854437
rs768756124
G
A
.