| General information of RDP00285 | |
|---|---|
| Gene Symbol: | FOXF2 |
| RefSeq ID: | NM_001452 |
| Repeat coordinate: | chr6:1390041-1390068 (+) |
| Repeat size: | 9 |
| Repeat region: | CDS |
| Repeat unit: | CCG |
| Repeat conservation: | PhastCons_score: 0.739; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | AAAAAAAA |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Acute Cerebrovascular Accidents | NM_001452 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
1390041
~rs78728576
CCCG
C
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
1390041
rs752348150
CCCGCCGCCGCCGCCG
CCCGCCGCCGCCG,CCCGCCGCCGCCGCCGCCG,CCCGCCGCCG,CCCG,C,CCCGCCG
2712148.18
6
1390042
.
C
T
2008014.06
6
1390045
.
CCG
C
240836.70
6
1390046
rs756860556
C
T
144464.41
6
1390047
.
G
GC
146033.31
6
1390048
.
CCG
C
89669.87
6
1390056
.
G
A
15270.81
6
1390059
.
G
A
1019.24
6
1390062
.
G
A
753.43
6
1390065
.
G
A,GCCGCCC
1269.67
6
1390067
.
C
T
2773.34
6
1390068
rs778501522
G
A,T
77022.02
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
1390041
rs752348150
CCCGCCGCCGCCG
CCCGCCGCCGCCGCCG,CCCGCCGCCG,C,CCCG,CCCGCCG,CCCGCCGCCGCCGCCGCCG
321363.32
6
1390058
.
C
T
729.86
6
1390062
.
G
A
938.86
6
1390063
.
C
T
285.57
6
1390067
.
C
T
1992.27
6
1390068
rs778501522
G
T
20269.81
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
6
1390041
rs778740039
CCCG
C
.
6
1390041
rs777365162
CCCGCCG
C
.
6
1390041
rs770758723
CCCGCCGCCG
C
.
6
1390041
rs747033801
CCCGCCGCCGCCG
CCCG,CCCGCCG,CCCGCCGCCG,CCCGCCGCCGCCGCCG,CCCGCCGCCGCCGCCGCCG,C
.
6
1390042
.
CCGCCGCCGCCGC
CCGCCGCCGC
.
6
1390044
.
GCC
GCCG
.
6
1390046
rs756860556
C
T
.
6
1390059
.
G
T
.
6
1390060
.
C
A
.
6
1390068
rs778501522
G
T
.