| General information of RDP00278 | |
|---|---|
| Gene Symbol: | SKIDA1 |
| RefSeq ID: | NM_207371 |
| Repeat coordinate: | chr10:21517092-21517119 (-) |
| Repeat size: | 9 |
| Repeat region: | CDS |
| Repeat unit: | CCG |
| Repeat conservation: | PhastCons_score: 0.996; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | AAAAAAAA |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
21517090
rs528652346
AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCGGC
AGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCGGC,AGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCGGC,AGGCGGC,AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCGGC,A
61236.03
10
21517094
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
G
16160.98
10
21517097
.
GGCGGCGGCGGCGGCGGCGGCGGCAGCA
G
6519.37
10
21517100
rs767464686
GGCGGCGGCGGCGGCGGCGGCAGCA
G,AGCGGCGGCGGCGGCGGCGGCAGCA
15341.22
10
21517103
.
GGCGGCGGCGGCGGCGGCAGCA
AGCGGCGGCGGCGGCGGCAGCA,G
16609.09
10
21517106
.
GGCGGCGGCGGCGGCAGCA
AGCGGCGGCGGCGGCAGCA,G
20218.15
10
21517109
.
G
A
16394.37
10
21517112
.
G
A
16039.02
10
21517115
.
G
A
17054.20
10
21517118
rs541879371
GGCAGCA
AGCAGCA,G
20713.66
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
21517090
rs528652346
AGGCGGCGGC
AGGCGGCGGCGGC,AGGCGGC,A,AGGC,AGGCGGCGGCGGCGGCGGC,AGGCGGCGGCGGCGGC
66158.88
10
21517091
rs865859755
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
TGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA,G
84608.62
10
21517094
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
G
11875.46
10
21517095
.
G
A
11809.53
10
21517097
.
G
GGCGGCGGCGGCGGCGGCGGCGGCAGCA
7659.37
10
21517100
rs767464686
GGCGGCGGCGGCGGCGGCGGCAGCA
GGCAGCAGCGGCGGCGGCGGCGGCGGCAGCA,G
5982.91
10
21517103
.
GGCGGCGGCGGCGGCGGCAGCA
G
5133.27
10
21517106
.
GGCGGCGGCGGCGGCAGCA
G,GGCGGCGGCGGCGGCAGCAGCGGCGGCGGCGGCAGCA
5552.26
10
21517109
.
GGCGGCGGCGGCAGCA
G
5174.01
10
21517112
.
G
A
5368.38
10
21517115
.
G
GGCGGCA
6451.39
10
21517116
.
G
GCGGCGGCGT
5395.11
10
21517117
.
C
T
5224.37
10
21517118
rs541879371
GGCA
AGCA,GGCAGCA,G
7360.11
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
10
21517090
rs761568410
AGGC
A
.
10
21517100
rs767464686
GGCGGCGGCGGCGGCGGCGGCAGCA
G
.
10
21517102
.
C
G
.
10
21517118
rs541879371
G
A
.
10
21517118
rs773056898
GGCA
G
.