| General information of RDP00258 | |
|---|---|
| Gene Symbol: | NCOR2 |
| RefSeq ID: | NM_001077261 |
| Repeat coordinate: | chr12:124402513-124402549 (-) |
| Repeat size: | 12 |
| Repeat region: | CDS |
| Repeat unit: | CAG |
| Repeat conservation: | PhastCons_score: 0.821; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | QQQQQQQQQQQQ |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Liver Cirrhosis, Experimental | NM_001077261 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
12
124402512
.
GGCTGCTGCT
G
100
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
12
124402526
rs369621213
C
G
.
12
124402535
rs373538989
C
T
.
12
124402547
~rs3040832
CTGTTGT
C,CTGTTGTTGT,CTGT
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
12
124402515
rs572199383
T
G
3282621.53
12
124402520
rs748002020
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGT
C
1809622.60
12
124402521
.
T
TGCTGCG
1814758.40
12
124402522
.
G
GCTT
737999.22
12
124402523
.
CTGCTGCTGCTGCTGCTGCTGCTGCTGTTGT
C
738130.33
12
124402526
rs369621213
C
G
108004.06
12
124402529
rs386378064
C
CTGA
38651.65
12
124402532
rs756084994
CTGCTGCTGCTGCTGCTGTTGT
CTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGTTGT,CTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGTTGT,CTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGTTGT,C
26770.53
12
124402535
rs770491645
CTGCTGCTGCTGCTGTTGT
CTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGTTGT,CTGT,C
18525.64
12
124402538
rs778367122
CTGCTGCTGCTGTTGT
C,CTGCTGCTGCTGCTGCTGTTGCTGCTGCTGTTGT,CTGCTGCTGCTGCTGTTGCTGCTGCTGTTGT
21523.01
12
124402541
.
CTGCTGCTGTTGT
C
21322.44
12
124402544
.
C
T,CTGCTGCTGTTGT
23341.40
12
124402547
rs772381510
CTGTTGT
CTGTTGTTGT,CTGCTGTTGTTGT,TTGTTGT,CTGT,C
91207.09
12
124402549
rs372331070
G
GC
39361.11
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
12
124402512
rs35831183
GGCTGCTGCT
GGCTGCTGCTGCT,GGCTGCTGCTGCTGCT,G,GGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCT
14733333.15
12
124402514
.
C
CTGCTGCTGG
146840.95
12
124402516
.
G
A
129788.12
12
124402521
.
T
TGCTGCG
108472.15
12
124402526
rs369621213
C
G
9636.87
12
124402532
rs756084994
CTGCTGCTGCTGCTGCTGTTGT
C
1850.52
12
124402544
.
CTGCTGT
C
1311.14
12
124402547
rs772381510
C
CTGCTGT
1542.48
12
124402549
rs372331070
G
GC
3567.84
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
12
124402512
rs753830534
GGCT
G
.
12
124402512
.
GGCTGCT
G
.
12
124402512
rs559681337
GGCTGCTGCT
G,GGCTGCT,GGCTGCTGCTGCT,GGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCT
.
12
124402515
rs572199383
T
G
.
12
124402520
.
C
T
.
12
124402520
rs748002020
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGT
C
.
12
124402523
.
C
T
.
12
124402526
rs369621213
C
G
.
12
124402529
rs386378064
C
CCTG
.
12
124402531
rs67031864
G
GGCT
.
12
124402532
rs756084994
CTGCTGCTGCTGCTGCTGT
C
.
12
124402535
rs373538989
C
T
.
12
124402535
rs770491645
C
CTGCTGCTGCTGCTGCTGTTGT
.
12
124402535
rs777921161
CTGCTGCTGCTGCTGT
C
.
12
124402535
rs748731070
CTGCTGCTGCTGCTGTTGT
C
.
12
124402538
rs778367122
CTGCTGCTGCTGTTGT
C
.
12
124402544
.
C
CT
.
12
124402546
rs745568149
G
GCTGCTA
.
12
124402547
.
C
T
.
12
124402547
rs772381510
C
CTGT
.
12
124402547
rs761070441
CTGT
C
.
12
124402547
rs775811021
CTGTTGT
C,CTGT,CTGTTGTTGT
.
12
124402549
rs372331070
G
GCTGCTT,GCTG
.