| General information of RDP00253 | |
|---|---|
| Gene Symbol: | NR6A1 |
| RefSeq ID: | NM_001278546 |
| Repeat coordinate: | chr9:124771265-124771285 (-) |
| Repeat size: | 2 |
| Repeat region: | 5' UTR |
| Repeat unit: | GGCGCGGAGC |
| Repeat conservation: | PhastCons_score: 0.570; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
124771276
.
GCTCCGCGCCC
G
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
124771265
rs548435860
GGCTCCGCGCC
GGCTCCGCGCCGCTCCGCGCC,G,CGCTCCGCGCC
8104.20
9
124771266
.
GCTCCGCGCCGCTCCGCGCCC
G
26027.63
9
124771268
.
TCCGCGCCGCTCCGCGCCCCTCCGCG
T,CCCGCGCCGCTCCGCGCCCCTCCGCG
26010.01
9
124771269
.
C
T,A
26109.66
9
124771270
.
C
T
25909.80
9
124771271
.
G
C
27282.51
9
124771273
.
GCCGCTCCGCGCCCCT
G,ACCGCTCCGCGCCCCT,GCCGCTCCGCGCCCCTCCGCTCCGCGCCCCT
26429.14
9
124771275
rs568742373
C
T,G
27697.19
9
124771276
rs565570681
GCTCCGCGCCC
G,GCTCCGCGCCCCTCCGCGCCC,CCTCCGCGCCC
87848.03
9
124771278
.
TCCGCGCCCCTCCGCG
T,TCCGCGCCCCTCCGCGCCGCGCCCCTCCGCG
80227.34
9
124771280
.
C
A
80061.66
9
124771281
.
G
C
80212
9
124771283
.
GCCCCTCCGCGCCGCGC
G,ACCCCTCCGCGCCGCGC
82302.44
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
124771266
.
GCTCCGCGCCGCTCCGCGCCC
G
.
9
124771275
rs568742373
C
T
.
9
124771276
rs565570681
GCTCCGCGCCC
G
.
9
124771282
.
C
G
.
9
124771283
.
GCCCCTCCGCGCCGCGC
G
.