| General information of RDP00199 | |
|---|---|
| Gene Symbol: | CAMK4 |
| RefSeq ID: | NM_001323374 |
| Repeat coordinate: | chr5:111224440-111224461 (+) |
| Repeat size: | 7 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.297; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Cocaine Dependence | NM_001323374 | 0.51 | 1 | 0 | CTD_human;PSYGENET |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
111224439
.
AGCGGCGGCG
A,AGCGGCGGCGGCGGCG,AGCGGCG
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
111224434
rs767617440
CGGGCAGCGG
TGGGCAGCGG,C
4489.39
5
111224435
rs757802886
GGGCAGCGGC
GGGCAGCGGCGGCGGCAGCGGC,CGGCAGCGGC,G
87542.73
5
111224439
rs759969062
AGCGGCGGCG
AGCGGCG,AGCGGCGGCGGCG,A,AGCGGCGGCGGCGGCG,AGCGGCGGCGGCGGCGGCG,AGCG
676594.38
5
111224442
rs760500088
G
A
447933.98
5
111224445
.
G
A,T
53200.80
5
111224446
.
G
A
47717.06
5
111224447
rs750225738
C
T
47997.82
5
111224448
.
G
A
47419.09
5
111224454
.
G
T
305.11
5
111224456
.
C
T
246.17
5
111224458
.
G
T
61.39
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
111224439
rs759969062
AGCGGCGGCG
AGCGGCG,A,AGCGGCGGCGGCGGCG,AGCG,AGCGGCGGCGGCG,GGCGGCGGCG
156350.04
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
5
111224439
.
AGCG
A
.
5
111224439
rs772826235
AGCG
A
.
5
111224439
rs747839230
AGCGGCG
A
.
5
111224439
rs778631289
AGCGGCGGCG
A
.
5
111224442
rs760500088
G
GGCGGCGGCA,GGCG
.
5
111224444
.
C
CG
.
5
111224447
rs750225738
C
T
.
5
111224449
.
G
GC
.
5
111224451
rs756016616
G
A
.
5
111224452
.
GC
GGG
.