| General information of RDP00172 | |
|---|---|
| Gene Symbol: | TTC3 |
| RefSeq ID: | NM_001001894 |
| Repeat coordinate: | chr21:37073298-37073316 (+) |
| Repeat size: | 6 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.053; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Malignant neoplasm of breast | NM_001001894 | 0.30 | 0 | 0 | UNIPROT |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
21
37073293
.
AGGTGGC
A
1069.61
21
37073296
.
TGGCGGCGGC
TGGCGGC,TGGCGGCGGCGGC,T,TGGC,TGGCGGCGGCGGCGGCGGC
413168.49
21
37073299
.
C
CGAA
369534.25
21
37073302
.
C
CGGG
7098.06
21
37073314
.
C
CT
33147.63
21
37073315
rs71328547
G
T,GGCT,GCT,GGCTGCT,GGCGGCT,GGCGGCGGCT
10322511.30
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
21
37073296
.
TGGC
T
.
21
37073296
.
TGGCGGC
T
.
21
37073296
.
TGGCGGCGGC
T
.
21
37073302
.
C
A,T
.
21
37073305
.
C
A,T
.
21
37073308
.
C
A,T
.
21
37073311
.
C
T
.
21
37073311
.
CGGCG
CGGCGGCT
.
21
37073312
.
G
T
.
21
37073312
.
GGCGG
GGCGGCTG
.
21
37073312
.
GGCGGCT
GGCGGCTGCT
.
21
37073312
.
G
GGCT
.
21
37073313
.
GCG
GCGGCT
.
21
37073313
.
GCGGCTGCTGCT
GCGGCTGCTGCTGCT
.
21
37073314
.
CG
CGGCT
.
21
37073315
rs113166620
G
GGCT,T
.
21
37073315
.
GGC
GGCTGC
.
21
37073315
.
GGCT
GGCTGCT
.
21
37073315
.
GGCTGCTGCTGCTGCTG
GGCTGCTGCTGCTGCTGCTG
.
21
37073315
rs16998912
G
GGCGGCT,GGCTGCT,GGCT
.
21
37073316
.
GCT
GCTGCT
.