| General information of RDP00168 | |
|---|---|
| Gene Symbol: | CDH4 |
| RefSeq ID: | NM_001794 |
| Repeat coordinate: | chr20:61252442-61252466 (+) |
| Repeat size: | 8 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.105; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
20
61252402
.
AGCGGCGGCGGCGGCGGCGATCGGAGCGGCGGCGGTGGTCTCGGCGGCG
A,AGCGGCGGCGGCGGCGATCGGAGCGGCGGCGGTGGTCTCGGCGGCG,AGCGGCGGCGGCGATCGGAGCGGCGGCGGTGGTCTCGGCGGCG,AGCGGCGGCGGCGGCGGCGGCGGCGATCGGAGCGGCGGCGGTGGTCTCGGCGGCG,AGCGGCGGCGGCGGCGGCGGCGATCGGAGCGGCGGCGGTGGTCTCGGCGGCG
2051.65
20
61252426
.
AGCGGCGGCGGTGGTCTCGGCGGCGGCG
A
2518.19
20
61252440
.
TCTCGGCGGCGGCGGCGGCGGCGGC
T
3981.71
20
61252442
rs551268783
TCGGCGGCGG
T,TCGGCGG,TCGGCGGCGGCGGCGG,TCGG,TCGGCGGCGGCGG
4244876.30
20
61252446
.
C
T
80330
20
61252459
.
GGCGGCGGCA
G
916.52
20
61252461
.
C
T
1498.86
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
20
61252441
.
CTCG
C
.
20
61252442
.
TCGG
G,T
.
20
61252442
rs34315306
TCGG
T
.
20
61252442
.
TCGGCGGCGG
TCGGCGG,T
.
20
61252443
.
CGGC
C
.
20
61252458
.
CGGC
T
.
20
61252466
.
GCA
TCT
.