| General information of RDP00153 | |
|---|---|
| Gene Symbol: | MAP4K3 |
| RefSeq ID: | NM_001270425 |
| Repeat coordinate: | chr2:39437121-39437139 (-) |
| Repeat size: | 6 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.198; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Squamous cell carcinoma of lung | NM_001270425 | 0.30 | 0 | 0 | UNIPROT |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
39437120
.
GGCCGCC
GGCCGCCGCC,GGCCGCCGCCGCC,G
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
39437120
rs765452464
GGCCGCCGCC
GGCC,GGCCGCCGCCGCCGCC,GGCCGCC,GGCCGCCGCCGCC,G
1269004.29
2
39437129
.
C
CGCCGCT
2426.39
2
39437130
rs543231188
G
C
8805.26
2
39437136
.
G
A
952.40
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
39437120
.
GGCC
G
.
2
39437120
.
GGCCGCC
G
.
2
39437120
.
GGCC
G
.
2
39437120
rs553241358
GGCCGCC
G,GGCCCCC,GGCCGCCGCC,GGCCGCCGCCGCC
.
2
39437124
.
G
C
.
2
39437127
.
G
GC
.
2
39437130
rs543231188
G
C
.
2
39437132
.
C
CG
.
2
39437133
.
G
GC
.
2
39437133
.
G
GC
.
2
39437135
.
C
CG
.