| General information of RDP00149 | |
|---|---|
| Gene Symbol: | CARM1 |
| RefSeq ID: | NM_199141 |
| Repeat coordinate: | chr19:10871590-10871638 (+) |
| Repeat size: | 16 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.074; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Psoriasis | NM_199141 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
19
10871571
.
TGCGGCGGCGGTAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
TGCGGCGGCG,TGCGGCGGCGGCGGCGGCGGCGGCGGCG,TGCGGCGGCGGCGGCG,TGCGGCGGCGGCGGCGGCGGCGGCG,T,TGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
11467.65
19
10871582
.
TAGCGGCAGCGGC
CAGCGGCAGCGGC,TAGCGGC,T,TGGCGGCGGCGGCGGCAGCGGCAGCGGC
20532.41
19
10871583
rs866382016
AGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
AGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG,AGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG,AGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG,AGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG,A
52681.97
19
10871589
rs866610548
AGCGGCGGCGGCGGCGGCG
AGCGGCGGCGGCGGCGGCGGCGGCG,AGCGGCGGCG,A,AGCGGCGGCGGCGGCGGCGGCG,AGCGGCGGCGGCG,AGCGGCGGCGGCGGCG
2906650.24
19
10871592
.
G
A,GGCA
2414309.78
19
10871595
rs868590477
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
G,AGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
2257649
19
10871598
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
G,GGCGGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,AGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
1920822.05
19
10871601
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
GGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,G,GGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
829779.90
19
10871603
.
C
G
497507.66
19
10871604
rs865852802
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
GGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,G
712848.17
19
10871607
rs868171964
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
GGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,G,GGTAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
415364.98
19
10871610
rs868641144
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
GGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,G,GGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
309349.67
19
10871613
rs865942557
GGCGGCGGCGGCGGCGGCGGCGGCGGCA
GGCGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCA,G,GGCTGCGGCGGCGGCGGCGGCGGCGGCGGCA
175156.82
19
10871616
rs867798542
GGCGGCGGCGGCGGCGGCGGCGGCA
G,TGCGGCGGCGGCGGCGGCGGCGGCA,GGCTGCGGCGGCGGCGGCGGCGGCGGCA,AGCGGCGGCGGCGGCGGCGGCGGCA
150764.67
19
10871617
.
G
T
153736.49
19
10871619
rs868511606
GGCGGCGGCGGCGGCGGCGGCA
G,TGCGGCGGCGGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCA
167105.66
19
10871622
.
GGCGGCGGCGGCGGCGGCA
GGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCA,G,GGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCA
249187.26
19
10871625
rs867174988
GGCGGCGGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCA
GGCGGCGGCGGCCTGGGCCCGGGCGCA,G,GGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCA
250458.08
19
10871628
.
GGCGGCGGCGGCA
GGCAGCGGCGGCGGCA,TGCGGCGGCGGCA,GGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCA,G
272204.24
19
10871630
.
C
T
308826.57
19
10871631
.
GGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCA
AGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCA,GGCGGCGGCAGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCA,G,GGCGGCGGCGGCCTGGGCCCGGGCGCA
273603.45
19
10871633
.
CGG
C
297320.90
19
10871634
.
GGCGGCA
AGCGGCA,G,GGCGGCAGCGGCA,GGCAGCGGCA
275762.70
19
10871636
.
CG
C
301242.82
19
10871637
rs867757627
GGCA
GGCAGCA,GGCGGCGGCGGCGGCGGCAGCA,G,GGCGGCAGCA,AGCA
409028.87
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
19
10871589
.
AGCG
A
.
19
10871589
.
AGCGGCGGCGGCGGCGGCG
A
.
19
10871592
.
G
A
.
19
10871595
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
G
.
19
10871601
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
G
.
19
10871604
.
G
T
.
19
10871610
.
G
T
.
19
10871610
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
G
.
19
10871613
.
G
GGCGGCGGCGGCGGCGGCGGCGGCA,GGCT
.
19
10871616
.
G
T
.
19
10871619
.
G
T
.
19
10871631
.
G
A
.
19
10871637
.
G
A
.
19
10871637
.
G
GGCA
.
19
10871637
.
GGCA
G
.