| General information of RDP00130 | |
|---|---|
| Gene Symbol: | WIPF2 |
| RefSeq ID: | NM_133264 |
| Repeat coordinate: | chr17:40219370-40219397 (+) |
| Repeat size: | 9 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.384; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
17
40219362
.
GGGCGGTGGCGGCGGCGGCGGC
GGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGGC,GGGCGGTGGCGGCGGTGGCGGCGGCGGCGGC,G,GGGCGGCGGCGGCGGTGGCGGCGGCGGCGGC,GGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGGC
4188.40
17
40219368
rs542122273
TGGCGGCGGCGGCGGC
TGGCGGCGGCGGCGGCGGCGGC,TGGCGGCGGCGGCGGCGGC,TGGCGGCGGCGGCGGCGGCGGCGGC,TGGCGGCGGCGGC,TGGCGGCGGCGGCGGCGGCGGCGGCGGC,T
2372751.23
17
40219371
.
C
T
427618.68
17
40219376
.
GCGGCGGCGGCGGCGGCGGCGGCGA
G
232522.03
17
40219379
.
GCGGCGGCGGCGGCGGCGGCGA
G,CCGGCGGCGGCGGCGGCGGCGA
218038.13
17
40219388
.
G
GCGGCGGCGGCGGCGGCGA
6505.79
17
40219391
.
G
GCGGCGGCGA,GCGGCGGCGGCGA
6896.56
17
40219394
rs535395784
G
T,GCGGCGA,GCGGCGGCGA,GCGA,GCGT
508457.95
17
40219397
rs760099763
G
A,GCGA,GCGGCGGCGA
13568.78
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
17
40219368
rs748065402
TGGC
T
.
17
40219368
.
TGGCGGC
T
.
17
40219368
.
TGGCGGCGGC
T
.
17
40219368
rs71152656
TGGCGGCGGCGGC
T
.
17
40219368
.
TGGCGGCGGCGGCGGC
T
.
17
40219383
rs796379644
C
T
.
17
40219385
.
G
A
.
17
40219386
.
C
CC
.
17
40219389
.
CGG
CGGC
.
17
40219389
.
C
CG
.
17
40219391
.
GCGG
GCGT
.
17
40219394
rs535395784
G
A,T
.
17
40219394
.
G
GCGGCGA
.
17
40219397
rs760099763
G
GCGA
.